pycom05g17260

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014475
Physical Location & Seq
Forward (+)
20475044 .. 20476189
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17260.1

Sequence Viewer

Length: 1146 bp
ATGATCGTTCAGAGGGACAGCCAGAGCACTGAATCAACACCTAGCCCTGTAGCCCCTGCGAAAAACAACCAGATCAATGAAGCAGAGAAGTATCCATTCATGAGAGCATTGAGAACTGTCGAAAACAAGAGTGATCCATGTGGTGGGAAGTATATTTATGTGCATGATCTTCCCTCGAGGTTTAACGAGGATATGTTAAAGGAATGTAGGAGTTTAAGCCGTTGGACAAATATGTGCAAGTTCACAACTAATGCTGGGCTTGGGCCTCCACTTGAGAATGCAGAGGGTGTGTTTGGGGATACGGGTTGGTATGCCACGAATCAGTTTGCTGTGGATGTCATATTTAATAATCGGATGAAGCAATATGAGTGTTTGACAAATGATTCGTCTCTTGCTGCTGCTATTTTTGTTCCCTTTTATGCTGGGTTTGACATTGCCCGGTACCTTTGGGGTTTCAACATATCAAGGAGGGATGCGGCTTCACTCGATCTGGTTGATTGGCTTATGAAGAGGCCAGAATGGAGCATTATGGGTGGCAAAGACCACTTTCTTGTTGCAGGAAGGATAACTTGGGATTTCAGGAGACTTTCAGAGGAAGAATCGGATTGGGGTAACAAGCTTCTCTTTCTGCCAGCTGCTAAGAATATGTCTATGCTTGTGGTAGAATCAAGCCCGTGGAATGCTAATGATTTTGGTATTCCATATCCCACGTATTTCCATCCAGCAAAAGATGCCGATGTGTTCATTTGGCAGGAACGAATGAGAAGATTAAAGCGTGAGTTCCTTTTCTCTTTTGCTGGTGCCCCCCGTCCTGACAATCCCAAGTCAATCAGGGGGCAGATCATTGATCAGTGCCGGAGTTCAAAGGTTGGTAAGCTGTTGGAATGTGATTTTGGGGAAAGCAAGTGTCATTCTCCAAGCAGTATAATGCATATGTTTCAGAGATCGATCTTTTCTGCCTGCAACCACAAGGCGATTCATACACACGAAGATCTGCTTTTGATTCAATGTTGGCTGGTTGCATACCTGTCTTCTTCCATCCTGGGTCAGCATACACGCAATATACTTGGCATTTACCAAAAGATTATACAAGGTATTCAGTGTTCATCCCAGAGGATGATATTCGCAAGAGGAACGTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000271 GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0005996 GO:0006004 GO:0006073 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009863 GO:0009969 GO:0009987 GO:0010033 GO:0010256 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0019318 GO:0019319 GO:0023052 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0032870 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0035690 GO:0040007 GO:0042221 GO:0042353 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

382

Amino Acids

43.54

Weight (kDa)

8.46

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 47 - 322 1.4e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20370
fragaria_vesca FvH4_2g20390
malus_domestica MD05G1187900.v1.1 MD10G1175500.v1.1
pyrus_communis pycom05g17260 pycom10g15130
rosa_chinensis RchiOBHm_Chr6g0286491
rosa_laevigata RLG00000012565
rosa_multiflora Rmu_sc0004816.1_g000011
rosa_roxburghii Rroxscaffold_7G00182280
rosa_rugosa Rorug06G0180200 Rorug06G0180300
rosa_samantha Rh6AG292600 Rh6BG296100 Rh6CG296900 Rh6DG288600
rosa_wichuraiana Rw6G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 175
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 441, 800
AccB7I CCANNNNNTGG 1 cut(s) 143
AciI CCGC 1 cut(s) 476
AclI AACGTT 1 cut(s) 1136
AclWI GGATC 1 cut(s) 128
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 457, 864, 1007
AjnI CCWGG 1 cut(s) 1041
AjuI GAANNNNNNNTTGG 4 cut(s) 553, 585, 876, 908
AluBI AGCT 3 cut(s) 619, 635, 877
AluI AGCT 3 cut(s) 619, 635, 877
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 393, 577
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 2 cut(s) 263, 512
ApeKI GCWGC 3 cut(s) 395, 398, 635
ArsI GACNNNNNNTTYG 4 cut(s) 367, 371, 399, 403
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 805
BanI GGYRCC 2 cut(s) 441, 800
BbsI GAAGAC 1 cut(s) 1023
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 382, 385, 622
BccI CCATC 2 cut(s) 726, 1046
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 1043
BciVI GTATCC 2 cut(s) 102, 292
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 393, 577
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 2 cut(s) 102, 292
BglII AGATCT 1 cut(s) 991
BisI GCNGC 4 cut(s) 396, 399, 477, 636
BlsI GCNGC 4 cut(s) 397, 400, 478, 637
Bme1390I CCNGG 2 cut(s) 439, 1043
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 443, 802
BmrFI CCNGG 2 cut(s) 439, 1043
BmsI GCATC 2 cut(s) 463, 721
BpiI GAAGAC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 674, 1042
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 1043
BseCI ATCGAT 1 cut(s) 947
BseDI CCNNGG 2 cut(s) 674, 1042
BseGI GGATG 7 cut(s) 340, 360, 478, 718, 1038, 1106, 1122
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 3 cut(s) 382, 385, 622
BseYI CCCAGC 2 cut(s) 254, 422
BshFI GGCC 2 cut(s) 265, 514
BshNI GGYRCC 2 cut(s) 441, 800
BshVI ATCGAT 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 439, 856
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 393, 577
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 283, 685
BsnI GGCC 2 cut(s) 265, 514
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 29, 805
BspACI CCGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 265, 514
BspDI ATCGAT 1 cut(s) 947
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 443, 802
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 2 cut(s) 441, 800
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 674, 1042
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 633, 961
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 7 cut(s) 340, 360, 478, 718, 1038, 1106, 1122
BstMAI GTCTC 2 cut(s) 393, 577
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 1 cut(s) 1043
BstSCI CCNGG 2 cut(s) 437, 1041
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 382, 385, 622
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
Bsu15I ATCGAT 1 cut(s) 947
BsuI GTATCC 2 cut(s) 102, 292
BsuRI GGCC 2 cut(s) 265, 514
BsuTUI ATCGAT 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 7 cut(s) 340, 360, 478, 718, 1038, 1106, 1122
BtsIMutI CAGTG 3 cut(s) 27, 857, 1106
Cac8I GCNNGC 2 cut(s) 633, 961
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 947
Csp6I GTAC 1 cut(s) 442
CviAII CATG 3 cut(s) 100, 138, 164
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 1041
EcoT22I ATGCAT 1 cut(s) 933
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 3 cut(s) 103, 141, 167
FalI AAGNNNNNCTT 6 cut(s) 553, 585, 608, 640, 981, 1013
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 99, 137, 163
FauNDI CATATG 1 cut(s) 933
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 4 cut(s) 396, 399, 477, 636
FokI GGATG 7 cut(s) 347, 367, 485, 705, 1025, 1093, 1129
Fsp4HI GCNGC 4 cut(s) 396, 399, 477, 636
FspBI CTAG 1 cut(s) 42
GluI GCNGC 4 cut(s) 396, 399, 477, 636
GsaI CCCAGC 2 cut(s) 258, 426
HaeIII GGCC 2 cut(s) 265, 514
HapII CCGG 2 cut(s) 439, 856
Hin1II CATG 3 cut(s) 103, 141, 167
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 7 cut(s) 32, 319, 383, 599, 665, 976, 1003
HpaII CCGG 2 cut(s) 439, 856
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 5 cut(s) 12, 354, 592, 604, 942
Hpy188III TCNNGA 3 cut(s) 100, 580, 812
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 710, 1136
HpyCH4V TGCA 7 cut(s) 163, 237, 281, 557, 931, 963, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 2 cut(s) 710, 1136
Hsp92II CATG 3 cut(s) 103, 141, 167
KpnI GGTACC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 847
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 3 cut(s) 382, 385, 622
LweI GCATC 2 cut(s) 463, 721
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 710, 1136
MaeIII GTNAC 1 cut(s) 611
MboII GAAGA 7 cut(s) 161, 520, 608, 777, 1001, 1023, 1026
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 29, 805
MmeI TCCRAC 2 cut(s) 203, 861
Mph1103I ATGCAT 1 cut(s) 933
MseI TTAA 5 cut(s) 183, 197, 215, 345, 770
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 439, 856
MspR9I CCNGG 2 cut(s) 439, 1043
Mva1269I GAATGC 2 cut(s) 283, 685
MvaI CCWGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 1 cut(s) 731
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 933
NlaIII CATG 3 cut(s) 103, 141, 167
NlaIV GGNNCC 2 cut(s) 443, 802
NsiI ATGCAT 1 cut(s) 933
PaeR7I CTCGAG 1 cut(s) 175
PagI TCATGA 1 cut(s) 99
PctI GAATGC 2 cut(s) 283, 685
PfeI GAWTC 7 cut(s) 32, 319, 383, 599, 665, 976, 1003
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 4 cut(s) 397, 400, 478, 637
Ppu21I YACGTR 1 cut(s) 711
Psp1406I AACGTT 1 cut(s) 1136
Psp6I CCWGG 1 cut(s) 1041
PspFI CCCAGC 2 cut(s) 254, 422
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 2 cut(s) 443, 802
PspPI GGNCC 1 cut(s) 263
PspXI VCTCGAGB 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 1087, 1119
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 5 cut(s) 183, 197, 215, 345, 770
SatI GCNGC 4 cut(s) 396, 399, 477, 636
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 439, 1043
SduI GDGCHC 2 cut(s) 29, 805
SfaNI GCATC 2 cut(s) 463, 721
SfcI CTRYAG 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 175, 272
SmoI CTYRAG 2 cut(s) 175, 272
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 437, 1041
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 713, 1139
TaqI TCGA 4 cut(s) 120, 176, 486, 947
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 7 cut(s) 32, 319, 383, 599, 665, 976, 1003
Tru1I TTAA 5 cut(s) 183, 197, 215, 345, 770
Tru9I TTAA 5 cut(s) 183, 197, 215, 345, 770
TscAI CASTG 3 cut(s) 34, 857, 1106
TseI GCWGC 3 cut(s) 395, 398, 635
TspDTI ATGAA 7 cut(s) 88, 93, 371, 521, 733, 968, 1095
TspRI CASTG 3 cut(s) 34, 857, 1106
Van91I CCANNNNNTGG 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 175
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.