Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014475

Physical Location & Seq

Genomic Coordinates Forward (+)

28512917 .. 28516744

Gene Structure 3828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGACTTCTTTCAGCTCAGATCATCATGAAAATTCAGAGATTTTGGTACGAAAGAATAATCAATTCGTGACGACGTTGACACTCAACAGACCTCGAAAACTGAATGCCCTCTCAGTTTCTATGCTCTCGAGGCTGTTTGAATTGTTCCTCCGCTACGAGCACAATCCCTATGTCAAGTTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCACCGGGGGGCGATGTTGCGTCTGTAGCTCATGATCTCTACAATGGCAATTTGAGAGCAGGTCTCAAATTGTTCAAAACTGCATACACCCTAATGTATTTCCTAGCAACAAAAACTACACCCCAGGTTTCATTTCTTAATGGAATCACTATGGGGAGCGGGGCAGGTGTTTCTATACACGGTAGCTTTTGTGTAGCAACGGAGAAGACAATATTTGCTATGCCGGAAACAGCTATTGGATGGTTTCCTGATGTTGGTTCATCTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCTAGATTGGATGGTTCTGAAATGCTTGCTTTGGGTCTAACAACTCACTTTGTTCCCTCATCTAAAACGGCTTTACTAGAAGAAGCCCTAGTAAGCAAACTAAGCGCTTCTTCACCTAGTACAAGCTCAACTGATGATTATGTTATTATTTCAGCTGTTCTAGATGAACACTCTGAGCAACCAGCTCTAAAAGCGAAGAGTGCTTGCCACTATGTGGATGTTATTGACAAGTGCTTTTCTCAATCAACAGTGGAAGAAATATTAAGTAGCCTAGAGAGGGAGCTTGCTACCTTAATCAACATAACTCATCACCATGAATGGTTATCGTCAGCAATTCAGTCACTGAGACAGGCATCACCAACAAGTTTGAAGATTACTTTGAGATTGATTCGGGGAGGAAGGCAGCTACAAGGAGTTGGTGAGTGCATTGTTCGTGAATATAGGATTGCTTGTCATGTTTTTCATGGTGAAATTAGCAATGACTTCATGGAGGGTTGCAGAGCTATGCTGTTGGACAAAGGTAAGAACCCAAAGTGGAAGCCTTCTAATTTGGAGCTTGTCACGGACCAGATGGTTGAGGACTACTTCTCTAGGTTGGATGATGAAGAAGAATTGAAGCTCGCTCAAACATTCAATTTGCCTGTCACTATCATTTCAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0005996 GO:0006004 GO:0006073 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009863 GO:0009969 GO:0009987 GO:0010033 GO:0010256 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0019318 GO:0019319 GO:0023052 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0032870 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0035690 GO:0040007 GO:0042221 GO:0042353 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

397

Amino Acids

43.96

Weight (kDa)

6.36

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	20 - 215	1.8e-23	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	24 - 372	8e-111	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20370
fragaria_vesca	FvH4_2g20390
malus_domestica	MD05G1187900.v1.1 MD10G1175500.v1.1
pyrus_communis	pycom05g17260 pycom10g15130
rosa_chinensis	RchiOBHm_Chr6g0286491
rosa_laevigata	RLG00000012565
rosa_multiflora	Rmu_sc0004816.1_g000011
rosa_roxburghii	Rroxscaffold_7G00182280
rosa_rugosa	Rorug06G0180200 Rorug06G0180300
rosa_samantha	Rh6AG292600 Rh6BG296100 Rh6CG296900 Rh6DG288600
rosa_wichuraiana	Rw6G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	2 cut(s)	260, 365
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	369
AciI	CCGC	2 cut(s)	151, 369
AcsI	RAATTY	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	742
AfaI	GTAC	2 cut(s)	48, 649
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	464, 742, 805
AgsI	TTSAA	7 cut(s)	140, 286, 486, 898, 1144, 1162, 1185
AjnI	CCWGG	2 cut(s)	333, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	278, 868
AlwNI	CAGNNNCTG	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	127
Aor51HI	AGCGCT	1 cut(s)	634
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	1093
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	6 cut(s)	204, 633, 830, 876, 959, 1007
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	1093
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	3 cut(s)	444, 533, 1093
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	2 cut(s)	335, 495
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	278, 868
BfaI	CTAG	8 cut(s)	314, 531, 605, 617, 645, 689, 800, 1119
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	2 cut(s)	260, 365
BisI	GCNGC	1 cut(s)	932
BlsI	GCNGC	1 cut(s)	933
Bme1390I	CCNGG	3 cut(s)	216, 335, 495
Bme18I	GGWCC	1 cut(s)	1093
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	1093
BmrFI	CCNGG	3 cut(s)	216, 335, 495
BmsI	GCATC	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpuMI	CCSGG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	215, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 742, 805
Bse3DI	GCAATG	1 cut(s)	1012
BseBI	CCWGG	2 cut(s)	335, 495
BseDI	CCNNGG	2 cut(s)	215, 333
BseGI	GGATG	4 cut(s)	455, 544, 751, 1132
BseLI	CCNNNNNNNGG	3 cut(s)	464, 742, 805
BseMI	GCAATG	1 cut(s)	1012
BseMII	CTCAG	4 cut(s)	30, 126, 693, 863
BseXI	GCAGC	1 cut(s)	943
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	215, 434
BslI	CCNNNNNNNGG	3 cut(s)	464, 742, 805
BsmAI	GTCTC	2 cut(s)	278, 868
BsmI	GAATGC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	19, 244
BspACI	CCGC	2 cut(s)	151, 369
BspCNI	CTCAG	4 cut(s)	29, 125, 694, 864
BspHI	TCATGA	2 cut(s)	25, 241
BspMI	ACCTGC	2 cut(s)	260, 365
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	1012
BssECI	CCNNGG	2 cut(s)	215, 333
BssMI	GATC	2 cut(s)	19, 244
Bst2UI	CCWGG	2 cut(s)	335, 495
Bst4CI	ACNGT	3 cut(s)	200, 392, 778
Bst6I	CTCTTC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	555, 733, 813, 1149
BstDEI	CTNAG	5 cut(s)	16, 112, 629, 702, 872
BstF5I	GGATG	4 cut(s)	455, 544, 751, 1132
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	2 cut(s)	22, 247
BstMAI	GTCTC	2 cut(s)	278, 868
BstMBI	GATC	2 cut(s)	19, 244
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 236, 630, 719, 728
BstNI	CCWGG	2 cut(s)	335, 495
BstSCI	CCNGG	3 cut(s)	214, 333, 493
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	455, 544, 751, 1132
BtsIMutI	CAGTG	2 cut(s)	783, 869
BveI	ACCTGC	2 cut(s)	260, 365
Cac8I	GCNNGC	4 cut(s)	555, 733, 813, 1149
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	2 cut(s)	25, 241
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	1093
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	47, 648
CviAII	CATG	6 cut(s)	26, 242, 842, 983, 992, 1015
CviQI	GTAC	2 cut(s)	47, 648
DdeI	CTNAG	5 cut(s)	16, 112, 629, 702, 872
DpnI	GATC	2 cut(s)	21, 246
DpnII	GATC	2 cut(s)	19, 244
DraIII	CACNNNGTG	1 cut(s)	742
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	1093
Eco47III	AGCGCT	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	333, 493
FaeI	CATG	6 cut(s)	29, 245, 845, 986, 995, 1018
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	6 cut(s)	25, 241, 841, 982, 991, 1014
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	932
FokI	GGATG	4 cut(s)	462, 551, 758, 1139
Fsp4HI	GCNGC	1 cut(s)	932
FspBI	CTAG	8 cut(s)	314, 531, 605, 617, 645, 689, 800, 1119
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	1 cut(s)	932
HaeII	RGCGCY	1 cut(s)	636
HapII	CCGG	2 cut(s)	215, 434
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	6 cut(s)	29, 245, 845, 986, 995, 1018
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	354, 498, 916
HpaII	CCGG	2 cut(s)	215, 434
HphI	GGTGA	6 cut(s)	204, 633, 830, 876, 959, 1007
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	4 cut(s)	19, 37, 547, 703
Hpy188III	TCNNGA	8 cut(s)	26, 67, 127, 242, 458, 486, 689, 962
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	921, 1080
HpyCH4III	ACNGT	3 cut(s)	200, 392, 778
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	293, 954, 1026
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 236, 630, 719, 728
HpyF3I	CTNAG	5 cut(s)	16, 112, 629, 702, 872
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	29, 245, 845, 986, 995, 1018
HspAI	GCGC	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	19, 244
LmnI	GCTCC	3 cut(s)	366, 808, 1081
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	1 cut(s)	890
MaeI	CTAG	8 cut(s)	314, 531, 605, 617, 645, 689, 800, 1119
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	4 cut(s)	67, 867, 1087, 1171
MalI	GATC	2 cut(s)	21, 246
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	2 cut(s)	19, 244
MboII	GAAGA	8 cut(s)	427, 620, 630, 736, 794, 910, 1145, 1148
MhlI	GDGCHC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	1020, 1104
MnlI	CCTC	9 cut(s)	102, 119, 123, 158, 595, 798, 917, 1012, 1099
MseI	TTAA	3 cut(s)	348, 791, 821
MslI	CAYNNNNRTG	2 cut(s)	302, 840
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	215, 434
MspR9I	CCNGG	3 cut(s)	216, 335, 495
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	2 cut(s)	335, 495
MwoI	GCNNNNNNNGC	5 cut(s)	130, 236, 630, 719, 728
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	19, 244
NlaIII	CATG	6 cut(s)	29, 245, 845, 986, 995, 1018
NmuCI	GTSAC	4 cut(s)	67, 867, 1087, 1171
PaeR7I	CTCGAG	1 cut(s)	127
PagI	TCATGA	2 cut(s)	25, 241
PaqCI	CACCTGC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	354, 498, 916
PflMI	CCANNNNNTGG	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	933
Psp6I	CCWGG	2 cut(s)	333, 493
PspGI	CCWGG	2 cut(s)	333, 493
PspPI	GGNCC	1 cut(s)	1093
PstNI	CAGNNNCTG	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	48, 649
RsaNI	GTAC	2 cut(s)	47, 648
RseI	CAYNNNNRTG	2 cut(s)	302, 840
SaqAI	TTAA	3 cut(s)	348, 791, 821
SatI	GCNGC	1 cut(s)	932
Sau3AI	GATC	2 cut(s)	19, 244
Sau96I	GGNCC	1 cut(s)	1093
ScrFI	CCNGG	3 cut(s)	216, 335, 495
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	890
SfcI	CTRYAG	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	1093
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	302, 840
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	2 cut(s)	151, 369
SspI	AATATT	2 cut(s)	423, 789
SspMI	CTAG	8 cut(s)	314, 531, 605, 617, 645, 689, 800, 1119
StyD4I	CCNGG	3 cut(s)	214, 333, 493
TaaI	ACNGT	3 cut(s)	200, 392, 778
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	94, 128
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	354, 498, 916
Tru1I	TTAA	3 cut(s)	348, 791, 821
Tru9I	TTAA	3 cut(s)	348, 791, 821
TscAI	CASTG	2 cut(s)	783, 876
TseFI	GTSAC	4 cut(s)	67, 867, 1087, 1171
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	4 cut(s)	67, 867, 1087, 1171
TspDTI	ATGAA	8 cut(s)	42, 330, 459, 708, 858, 980, 1003, 1146
TspGWI	ACGGA	2 cut(s)	425, 1106
TspRI	CASTG	2 cut(s)	783, 876
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	1093
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	8 cut(s)	314, 531, 605, 617, 645, 689, 800, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.