pycom05g17700

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0021263
Physical Location & Seq
Forward (+)
20835075 .. 20835464
390 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17700.1

Sequence Viewer

Length: 390 bp
ATGATAATATACAGCATCATCATCAGGGAATCTTCTAGTGCCCTTTATATTTTTCAATTTTTGTTGTCCCTTTACCTTTGTCGAATGAATGCGAAATATTTGAAGCAGCATAAACTCTCCGATAATGTATTTACCAGTCCAATCTTGCCTTCAGTGATCTCCAATTGGAGTCTAGTTGTCCATTTGAATCTTCGACGCAATAGCTTCAGTGGGAATATTCCACCTGAGCTTGGGCAGTTGACAGATTTGAATTATCTAAGCCTAGACTCTAATTATTTTGGTGGGGGACTTCCTAGTCAAATTGGAAATCTAAACTTGCTATACACACTAAACGTGATCAGGAACCATTTGACAAGAAAGATCCTTCAGAGTATCGGCAATTTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.68

Weight (kDa)

9.61

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 49 - 127 4.9e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021263)

Species Orthologous Gene IDs
pyrus_communis pycom05g17650 pycom05g17700 pycom05g17800
rosa_chinensis RchiOBHm_Chr6g0287021
rosa_roxburghii Rroxscaffold_7G00181730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 294
AclWI GGATC 1 cut(s) 355
AcuI CTGAAG 3 cut(s) 135, 190, 350
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 56, 103, 187, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 2 cut(s) 204, 229
AluI AGCT 2 cut(s) 204, 229
AlwI GGATC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 118
BclI TGATCA 1 cut(s) 336
BfaI CTAG 4 cut(s) 36, 173, 263, 294
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 344
BmsI GCATC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 118
BslFI GGGAC 2 cut(s) 52, 300
BslI CCNNNNNNNGG 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 52, 300
BsmI GAATGC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 156, 336, 360
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 135
BssMI GATC 3 cut(s) 156, 336, 360
BstDEI CTNAG 3 cut(s) 225, 257, 387
BstKTI GATC 3 cut(s) 159, 339, 363
BstMBI GATC 3 cut(s) 156, 336, 360
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 159, 214
CseI GACGC 1 cut(s) 204
CviJI RGCY 3 cut(s) 204, 229, 261
CviKI_1 RGCY 3 cut(s) 204, 229, 261
DdeI CTNAG 3 cut(s) 225, 257, 387
DpnI GATC 3 cut(s) 158, 338, 362
DpnII GATC 3 cut(s) 156, 336, 360
DrdI GACNNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 294
Eco57I CTGAAG 3 cut(s) 135, 190, 350
FaiI YATR 4 cut(s) 10, 48, 111, 322
FaqI GGGAC 2 cut(s) 52, 300
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 4 cut(s) 36, 173, 263, 294
GluI GCNGC 1 cut(s) 107
HgaI GACGC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 4 cut(s) 29, 169, 187, 266
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 121, 369
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 159, 374
HpyCH4IV ACGT 1 cut(s) 333
HpyF3I CTNAG 3 cut(s) 225, 257, 387
HpySE526I ACGT 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 3 cut(s) 156, 336, 360
LpnPI CCDG 4 cut(s) 10, 148, 237, 325
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 24
MaeI CTAG 4 cut(s) 36, 173, 263, 294
MaeII ACGT 1 cut(s) 333
MalI GATC 3 cut(s) 158, 338, 362
MboI GATC 3 cut(s) 156, 336, 360
MboII GAAGA 2 cut(s) 24, 182
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 6 cut(s) 56, 163, 250, 271, 300, 379
MlyI GAGTC 2 cut(s) 178, 260
MunI CAATTG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 94
NdeII GATC 3 cut(s) 156, 336, 360
NlaIV GGNNCC 1 cut(s) 344
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 29, 187
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 2 cut(s) 177, 260
PpsI GAGTC 2 cut(s) 177, 260
PspN4I GGNNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 360
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 3 cut(s) 156, 336, 360
SchI GAGTC 2 cut(s) 178, 260
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 78, 206, 226, 231, 336
SfaNI GCATC 1 cut(s) 24
Sse9I AATT 6 cut(s) 56, 163, 250, 271, 300, 379
SspI AATATT 2 cut(s) 98, 217
SspMI CTAG 4 cut(s) 36, 173, 263, 294
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 82, 193
TasI AATT 6 cut(s) 56, 163, 250, 271, 300, 379
TfiI GAWTC 2 cut(s) 29, 187
TscAI CASTG 2 cut(s) 159, 214
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 2 cut(s) 159, 214
XspI CTAG 4 cut(s) 36, 173, 263, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.