Rroxscaffold_7G00181730

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021263
Physical Location & Seq
Reverse (-)
20815983 .. 20819475
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181730.1

Sequence Viewer

Length: 1044 bp
ATGGTTAAGTTTAATGTCGGCACAAACCAACTTGAAGGGGAGCTGCCGAAAACTATTTCTCACCTCAGAAAACTAGAGTGGTTTGCCGTTTACACTAATAGGTTTTCGGGGACCATTCCTAGTGATTTCGGGAATGGGGAGTTTCCAGTTTCCATTGGGAATCTAAGCTTGTTGTTCACTCTTAATCTCAGCAGGAACCACTTGACGGGAACTATTCCTCATGTTCTAGGCAAATTGACTAAACTCGAGCTACTTGATTTGTCAGATAATAATTTTACAGGGGTATTACCAGTCGACCCTGGAATGTTTGAGAGCTTAACAAGCTTGAACATAAGCCGCAACAAATTATCAGGTGGAATACCTGAGGAGATTGGTAATCTACACCTGCGGTACTTGTTGGACCTAAGCAGCAATTCATTCTCGGGATCACTACCATTAAACCTTGCCAAGCTTATAATGCTGGAGATTCTTAATGTCTCGCATAACCAACTCTCTAGAAACATCCCATCAACCTATTCCAGAATGGTTAGTCTTCTGGGCATTGATTTTTCTTACAACAACTTGACAGGTCCAATCCCAACCGGTGGCATTTTCCAAAAGAAGCATCCGAAGCAATCCGCTTTCATTGCTTTCAATAGTGGTTTGTGTGGCGAAACAGAGCGAAATAGACTCTCCATGCATATCGGGTCCCAAAAAGTCGAACAAGAAAATTGTTGTTGTCATGTCAGCCTTGTTCCCATTTGTGGTTTATTGCTGACGGTGACCATATCCGCTATAATCCTCAAGTTCTGCAAGAAATCAAAGCTTGGAGAAATCGATCACCCTAAGTTACCACACAAGTCAAACCGGAGCCAGCTCCAACAAGAACCCGAGTCCAACACCACCACCCATCATCTCGGCCTCCACACACATACCTCAAGATCATCTCGGCGCTGCTCCCGAAATCCTTCGATCACCGGCCACGACGAACGAGCTCAAGTCGCTACTAGAACCGGAGTGTCTTCGCCAACCGTTGCGGAGCCGACGCAGCAAAAAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

347

Amino Acids

38.17

Weight (kDa)

9.17

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 52 - 92 7.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021263)

Species Orthologous Gene IDs
pyrus_communis pycom05g17650 pycom05g17700 pycom05g17800
rosa_chinensis RchiOBHm_Chr6g0287021
rosa_roxburghii Rroxscaffold_7G00181730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AarI CACCTGC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 393
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 294
AciI CCGC 5 cut(s) 337, 388, 618, 771, 1016
AclWI GGATC 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 958
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 3 cut(s) 205, 584, 743
AgeI ACCGGT 1 cut(s) 581
AgsI TTSAA 3 cut(s) 35, 328, 634
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 9 cut(s) 43, 168, 250, 315, 324, 451, 805, 856, 974
AluI AGCT 9 cut(s) 43, 168, 250, 315, 324, 451, 805, 856, 974
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 3 cut(s) 245, 421, 869
AoxI GGCC 2 cut(s) 898, 958
ApeKI GCWGC 4 cut(s) 43, 408, 933, 1027
AsiGI ACCGGT 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 946
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 4 cut(s) 111, 400, 569, 687
AsuHPI GGTGA 4 cut(s) 53, 772, 812, 946
AvaI CYCGRG 3 cut(s) 245, 421, 869
AvaII GGWCC 4 cut(s) 111, 400, 569, 687
AxyI CCTNAGG 1 cut(s) 363
BanII GRGCYC 1 cut(s) 976
BbsI GAAGAC 2 cut(s) 524, 993
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 4 cut(s) 30, 420, 920, 1039
BccI CCATC 2 cut(s) 514, 897
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 5 cut(s) 74, 120, 227, 495, 987
BfoI RGCGCY 1 cut(s) 934
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 5 cut(s) 44, 337, 409, 934, 1028
BlsI GCNGC 5 cut(s) 45, 338, 410, 935, 1029
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 4 cut(s) 111, 400, 569, 687
BmeT110I CYCGRG 3 cut(s) 245, 421, 869
BmgT120I GGNCC 4 cut(s) 111, 400, 569, 687
BmiI GGNNCC 6 cut(s) 112, 197, 688, 689, 851, 1020
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 524, 993
BpmI CTGGAG 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 767, 901, 960
Bsa29I ATCGAT 1 cut(s) 816
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 3 cut(s) 581, 846, 992
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 584, 743
Bse118I RCCGGY 2 cut(s) 581, 956
Bse1I ACTGG 2 cut(s) 146, 290
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 300
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 501, 604
BseLI CCNNNNNNNGG 3 cut(s) 205, 584, 743
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 3 cut(s) 79, 202, 354
BseNI ACTGG 2 cut(s) 146, 290
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 4 cut(s) 30, 420, 920, 1039
BshFI GGCC 2 cut(s) 900, 960
BshTI ACCGGT 1 cut(s) 581
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 976
BsiHKCI CYCGRG 3 cut(s) 245, 421, 869
BsiSI CCGG 4 cut(s) 582, 847, 957, 993
BslFI GGGAC 2 cut(s) 124, 673
BslI CCNNNNNNNGG 3 cut(s) 205, 584, 743
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 2 cut(s) 124, 673
BsnI GGCC 2 cut(s) 900, 960
BsoBI CYCGRG 3 cut(s) 245, 421, 869
Bsp1286I GDGCHC 1 cut(s) 976
Bsp143I GATC 4 cut(s) 425, 817, 920, 951
BspACI CCGC 5 cut(s) 337, 388, 618, 771, 1016
BspANI GGCC 2 cut(s) 900, 960
BspCNI CTCAG 3 cut(s) 78, 201, 355
BspDI ATCGAT 1 cut(s) 816
BspLI GGNNCC 6 cut(s) 112, 197, 688, 689, 851, 1020
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 2 cut(s) 581, 956
BsrI ACTGG 2 cut(s) 146, 290
BssAI RCCGGY 2 cut(s) 581, 956
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 4 cut(s) 425, 817, 920, 951
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 760, 1012
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 6 cut(s) 65, 164, 188, 363, 404, 825
BstEII GGTNACC 1 cut(s) 760
BstF5I GGATG 2 cut(s) 501, 604
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 4 cut(s) 428, 820, 923, 954
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 4 cut(s) 425, 817, 920, 951
BstMWI GCNNNNNNNGC 6 cut(s) 321, 457, 610, 626, 980, 1027
BstNI CCWGG 1 cut(s) 300
BstPI GGTNACC 1 cut(s) 760
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 30, 420, 920, 1039
BstV2I GAAGAC 2 cut(s) 524, 993
Bsu15I ATCGAT 1 cut(s) 816
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 900, 960
BsuTUI ATCGAT 1 cut(s) 816
BtsCI GGATG 2 cut(s) 501, 604
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 854
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 2 cut(s) 581, 956
Cfr13I GGNCC 4 cut(s) 111, 400, 569, 687
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 581
CviAII CATG 3 cut(s) 221, 676, 722
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 6 cut(s) 65, 164, 188, 363, 404, 825
DpnI GATC 4 cut(s) 427, 819, 922, 953
DpnII GATC 4 cut(s) 425, 817, 920, 951
EaeI YGGCCR 1 cut(s) 958
Ecl136II GAGCTC 1 cut(s) 974
Eco24I GRGCYC 1 cut(s) 976
Eco47I GGWCC 4 cut(s) 111, 400, 569, 687
Eco53kI GAGCTC 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 3 cut(s) 245, 421, 869
Eco91I GGTNACC 1 cut(s) 760
EcoICRI GAGCTC 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 687
EcoO65I GGTNACC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 976
FaeI CATG 3 cut(s) 224, 679, 725
FaqI GGGAC 2 cut(s) 124, 673
FatI CATG 3 cut(s) 220, 675, 721
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 5 cut(s) 44, 337, 409, 934, 1028
FokI GGATG 2 cut(s) 488, 591
FriOI GRGCYC 1 cut(s) 976
Fsp4HI GCNGC 5 cut(s) 44, 337, 409, 934, 1028
FspBI CTAG 5 cut(s) 74, 120, 227, 495, 987
GlaI GCGC 1 cut(s) 932
GluI GCNGC 5 cut(s) 44, 337, 409, 934, 1028
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 2 cut(s) 900, 960
HapII CCGG 4 cut(s) 582, 847, 957, 993
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 1 cut(s) 933
Hin1II CATG 3 cut(s) 224, 679, 725
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 4 cut(s) 166, 322, 449, 803
HinfI GANTC 4 cut(s) 160, 466, 669, 872
HpaII CCGG 4 cut(s) 582, 847, 957, 993
HphI GGTGA 4 cut(s) 53, 772, 812, 946
Hpy166II GTNNAC 3 cut(s) 91, 177, 295
Hpy188I TCNGA 3 cut(s) 68, 265, 609
Hpy188III TCNNGA 6 cut(s) 130, 423, 495, 519, 918, 939
Hpy8I GTNNAC 3 cut(s) 91, 177, 295
Hpy99I CGWCG 2 cut(s) 968, 1027
HpyAV CCTTC 2 cut(s) 29, 957
HpyCH4III ACNGT 2 cut(s) 760, 1012
HpyCH4V TGCA 2 cut(s) 679, 792
HpyF10VI GCNNNNNNNGC 6 cut(s) 321, 457, 610, 626, 980, 1027
HpyF3I CTNAG 6 cut(s) 65, 164, 188, 363, 404, 825
Hsp92II CATG 3 cut(s) 224, 679, 725
HspAI GCGC 1 cut(s) 931
KflI GGGWCCC 1 cut(s) 687
Kzo9I GATC 4 cut(s) 425, 817, 920, 951
LmnI GCTCC 5 cut(s) 40, 849, 861, 941, 1018
Lsp1109I GCAGC 4 cut(s) 30, 420, 920, 1039
LweI GCATC 1 cut(s) 613
MaeI CTAG 5 cut(s) 74, 120, 227, 495, 987
MaeIII GTNAC 2 cut(s) 760, 828
MalI GATC 4 cut(s) 427, 819, 922, 953
MboI GATC 4 cut(s) 425, 817, 920, 951
MboII GAAGA 2 cut(s) 524, 993
MhlI GDGCHC 1 cut(s) 976
MluCI AATT 6 cut(s) 233, 271, 344, 412, 709, 1035
MlyI GAGTC 2 cut(s) 663, 881
MmeI TCCRAC 3 cut(s) 378, 883, 900
MnlI CCTC 6 cut(s) 74, 228, 358, 791, 911, 925
Mph1103I ATGCAT 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 946
MseI TTAA 7 cut(s) 6, 12, 183, 317, 437, 471, 1042
MspI CCGG 4 cut(s) 582, 847, 957, 993
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 6 cut(s) 321, 457, 610, 626, 980, 1027
NdeII GATC 4 cut(s) 425, 817, 920, 951
NlaIII CATG 3 cut(s) 224, 679, 725
NlaIV GGNNCC 6 cut(s) 112, 197, 688, 689, 851, 1020
NmeAIII GCCGAG 2 cut(s) 876, 907
NmuCI GTSAC 1 cut(s) 760
NsiI ATGCAT 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 2 cut(s) 160, 466
PflMI CCANNNNNTGG 1 cut(s) 584
PinAI ACCGGT 1 cut(s) 581
PkrI GCNGC 5 cut(s) 45, 338, 410, 935, 1029
PleI GAGTC 2 cut(s) 663, 880
PpsI GAGTC 2 cut(s) 663, 880
PpuMI RGGWCCY 1 cut(s) 687
PsiI TTATAA 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 976
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 760
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 6 cut(s) 112, 197, 688, 689, 851, 1020
PspPI GGNCC 4 cut(s) 111, 400, 569, 687
PspPPI RGGWCCY 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 245
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 976
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 7 cut(s) 6, 12, 183, 317, 437, 471, 1042
SatI GCNGC 5 cut(s) 44, 337, 409, 934, 1028
Sau3AI GATC 4 cut(s) 425, 817, 920, 951
Sau96I GGNCC 4 cut(s) 111, 400, 569, 687
SchI GAGTC 2 cut(s) 663, 881
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 976
SfaNI GCATC 1 cut(s) 613
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 4 cut(s) 111, 400, 569, 687
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 4 cut(s) 245, 782, 916, 975
SmoI CTYRAG 4 cut(s) 245, 782, 916, 975
Sse9I AATT 6 cut(s) 233, 271, 344, 412, 709, 1035
SsiI CCGC 5 cut(s) 337, 388, 618, 771, 1016
SspMI CTAG 5 cut(s) 74, 120, 227, 495, 987
SstI GAGCTC 1 cut(s) 976
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 760, 1012
TaqI TCGA 5 cut(s) 246, 294, 699, 816, 950
TasI AATT 6 cut(s) 233, 271, 344, 412, 709, 1035
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 2 cut(s) 160, 466
Tru1I TTAA 7 cut(s) 6, 12, 183, 317, 437, 471, 1042
Tru9I TTAA 7 cut(s) 6, 12, 183, 317, 437, 471, 1042
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 43, 408, 933, 1027
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 2 cut(s) 405, 613
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 4 cut(s) 111, 400, 569, 687
XbaI TCTAGA 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 946
XspI CTAG 5 cut(s) 74, 120, 227, 495, 987
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.