pycom05g22090

Vacuolar-sorting receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0024641
Physical Location & Seq
Forward (+)
24606823 .. 24608313
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22090.1

Sequence Viewer

Length: 630 bp
ATGGCTTTTCTGCCAAAGCTCACAGCTTTTTTTGTGGTGGTGTTATCAGTTTTTGAGAACCATGTGTTTGCAAGGTTTGTGGTGGAGACGGAAAGCATTAAGGTTCTCTATCCAATGAGCGTGCGCTCGAAGCACGACGGTGCTATCGGCAACTTTGGGCGGCCGAACTATGGAGGCTCCCTGGTGGGCGCTGTTGTCTATCCTGAAAAAGGGTCTTCCGGGTGTGAAGCTTTTGGGGGTGACAAGCCTTTCAAGTCGAGAAACTGTCGCTCCACCATTGTTTTACTTGATCGCGGAGGTTGCTACTTTGCTTTGAAGGTGTGGAATGCTCAACAGGCTGGAGCTAAGGCTGTTTTAGTGGCAGACAACATTGAAGAGCCTCTAATAACAATGGATTCCCCGGAAGAGAGCACTGATGCAGATGGTTACATAGAGAGGATTGGAATTCCATCAGCTCTGATAGAGAAAGCTTTTGGTGATAGCTTGAAGGAAGCGTTAAAGAAGAAGGAAGGTGTTATGGTGAAACTTGACTGGAGAGAGTCCGTGCCACACCCCGATCAATCAGAGTTGAATACGAGTTCTGGACAAACAGCAACGACGAGTGTGGGGCTCGTTGTGATGAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PA cEGF

Protein Analysis

210

Amino Acids

22.61

Weight (kDa)

5.97

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 63 - 162 3.5e-18 PA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024641)

Species Orthologous Gene IDs
pyrus_communis pycom05g22090
rosa_chinensis RchiOBHm_Chr5g0021501
rosa_samantha Rh5CG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AciI CCGC 2 cut(s) 160, 294
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 170, 209
AgsI TTSAA 5 cut(s) 253, 316, 374, 487, 571
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 7 cut(s) 19, 26, 230, 344, 455, 470, 483
AluI AGCT 7 cut(s) 19, 26, 230, 344, 455, 470, 483
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 80
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 2 cut(s) 126, 191
AsuC2I CCSGG 2 cut(s) 220, 401
AsuHPI GGTGA 3 cut(s) 251, 488, 532
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 413
BccI CCATC 2 cut(s) 416, 457
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 2 cut(s) 220, 401
BcoDI GTCTC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 182, 220, 401
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 3 cut(s) 182, 220, 401
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 2 cut(s) 360, 553
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 2 cut(s) 220, 401
BsaJI CCNNGG 2 cut(s) 180, 399
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 209
Bse1I ACTGG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 180, 399
BseLI CCNNNNNNNGG 2 cut(s) 170, 209
BseNI ACTGG 1 cut(s) 536
BseX3I CGGCCG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 219, 401
BslI CCNNNNNNNGG 2 cut(s) 170, 209
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 413, 612
Bsp143I GATC 2 cut(s) 289, 556
BspACI CCGC 2 cut(s) 160, 294
BspANI GGCC 1 cut(s) 163
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 180, 399
BssMI GATC 2 cut(s) 289, 556
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 140, 266
Bst6I CTCTTC 2 cut(s) 369, 399
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 126, 191
BstKTI GATC 2 cut(s) 292, 559
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 289, 556
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 130, 300, 335
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 180, 218, 399
BstUI CGCG 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 207
BstZI CGGCCG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 2 cut(s) 126, 191
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 1 cut(s) 62
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 291, 558
DpnII GATC 2 cut(s) 289, 556
EaeI YGGCCR 1 cut(s) 161
EagI CGGCCG 1 cut(s) 161
Eam1104I CTCTTC 2 cut(s) 369, 399
EarI CTCTTC 2 cut(s) 369, 399
EclXI CGGCCG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 612
Eco52I CGGCCG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 63, 171, 431, 518
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 1 cut(s) 161
GlaI GCGC 2 cut(s) 125, 190
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 2 cut(s) 360, 553
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 219, 401
HhaI GCGC 2 cut(s) 126, 191
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 2 cut(s) 124, 189
HinP1I GCGC 2 cut(s) 124, 189
HindIII AAGCTT 2 cut(s) 228, 468
HinfI GANTC 2 cut(s) 395, 539
HpaII CCGG 2 cut(s) 219, 401
HphI GGTGA 3 cut(s) 251, 488, 532
Hpy188I TCNGA 2 cut(s) 459, 565
Hpy188III TCNNGA 3 cut(s) 203, 258, 582
Hpy99I CGWCG 2 cut(s) 140, 601
HpyAV CCTTC 4 cut(s) 310, 481, 499, 503
HpyCH4III ACNGT 2 cut(s) 140, 266
HpyCH4V TGCA 2 cut(s) 71, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 300, 335
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 2 cut(s) 124, 189
Kzo9I GATC 2 cut(s) 289, 556
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 3 cut(s) 182, 275, 341
LpnPI CCDG 9 cut(s) 167, 194, 216, 232, 320, 324, 414, 517, 567
LweI GCATC 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 239, 425
MalI GATC 2 cut(s) 291, 558
MboI GATC 2 cut(s) 289, 556
MboII GAAGA 4 cut(s) 207, 386, 416, 514
MhlI GDGCHC 2 cut(s) 413, 612
MluCI AATT 1 cut(s) 444
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 4 cut(s) 167, 290, 390, 429
MseI TTAA 2 cut(s) 99, 497
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 2 cut(s) 219, 401
MspR9I CCNGG 3 cut(s) 182, 220, 401
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 130, 300, 335
NciI CCSGG 2 cut(s) 220, 401
NdeII GATC 2 cut(s) 289, 556
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 99, 497
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 289, 556
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 182, 220, 401
SduI GDGCHC 2 cut(s) 413, 612
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 444
SsiI CCGC 2 cut(s) 160, 294
StyD4I CCNGG 3 cut(s) 180, 218, 399
TaaI ACNGT 2 cut(s) 140, 266
TaqI TCGA 2 cut(s) 128, 257
TasI AATT 1 cut(s) 444
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 2 cut(s) 99, 497
Tru9I TTAA 2 cut(s) 99, 497
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspGWI ACGGA 2 cut(s) 104, 532
TspRI CASTG 1 cut(s) 418
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.