Rh5CG169900

Vacuolar-sorting receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0024641
Physical Location & Seq
Reverse (-)
15843316 .. 15843773
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG169900.1

Sequence Viewer

Length: 366 bp
ATGGACTCCCCAGAGGAGAGCACTGATGCAGATGGTTACATAGAGAAGATTGGAATTCCATCAGCTTTGATAGAGAAATCATTTGGTGACAGCTTGAAGAATGCTGTGAAAAACAGCGAAGATATTGTAGTAAAACTTGACTGGAGAGAGTCACCTGATCAAAGAGTTGAATATGAGTTCTGGACAAACAGCAATGACGTATGCGGGGCTTGCTGTGATGAGAAAATGAGATCTGTCAAAAATTTCAGGGGCTTTTGTCCTTACCGCTCAATGCAAGTCTCAATGCATAAACGAGGGGAGATACTGTGCATTAGATCCGGAGGAAAATTTCGGAGACGGGTACCAAGGGAAGGATGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PA cEGF

Protein Analysis

121

Amino Acids

13.79

Weight (kDa)

6.59

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VSR_TRX PF25011 56 - 84 2.2e-07 Vacuolar sorting receptor thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024641)

Species Orthologous Gene IDs
pyrus_communis pycom05g22090
rosa_chinensis RchiOBHm_Chr5g0021501
rosa_samantha Rh5CG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 267
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 2 cut(s) 204, 265
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 3 cut(s) 54, 241, 326
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 97, 170
AluBI AGCT 2 cut(s) 65, 93
AluI AGCT 2 cut(s) 65, 93
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 283, 328
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 317
ApoI RAATTY 3 cut(s) 54, 241, 326
Asp718I GGTACC 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 98, 144
BanI GGYRCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 2 cut(s) 26, 67
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 283, 328
BglII AGATCT 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 283, 328
BsmBI CGTCTC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 3 cut(s) 157, 230, 314
BspACI CCGC 2 cut(s) 204, 265
BspEI TCCGGA 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 340
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 3 cut(s) 157, 230, 314
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 211
BstF5I GGATG 1 cut(s) 359
BstKTI GATC 3 cut(s) 160, 233, 317
BstMAI GTCTC 2 cut(s) 283, 328
BstMBI GATC 3 cut(s) 157, 230, 314
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 230, 314
BstYI RGATCY 2 cut(s) 230, 314
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 341
CviJI RGCY 4 cut(s) 65, 93, 209, 252
CviKI_1 RGCY 4 cut(s) 65, 93, 209, 252
CviQI GTAC 1 cut(s) 341
DpnI GATC 3 cut(s) 159, 232, 316
DpnII GATC 3 cut(s) 157, 230, 314
Eco130I CCWWGG 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 328
FaiI YATR 4 cut(s) 41, 174, 202, 288
FauI CCCGC 1 cut(s) 197
FbaI TGATCA 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 163
HapII CCGG 1 cut(s) 318
HinfI GANTC 2 cut(s) 5, 149
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 98, 144
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 181, 318
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 29, 274, 286, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 317
KpnI GGTACC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 157, 230, 314
LpnPI CCDG 6 cut(s) 24, 127, 166, 168, 232, 331
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 35, 86, 150
MalI GATC 3 cut(s) 159, 232, 316
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 157, 230, 314
MboII GAAGA 3 cut(s) 58, 109, 131
MflI RGATCY 2 cut(s) 230, 314
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 54, 241, 326
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 3 cut(s) 7, 287, 314
Mph1103I ATGCAT 1 cut(s) 288
MroI TCCGGA 1 cut(s) 317
MspI CCGG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 3 cut(s) 157, 230, 314
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 86, 150
NsiI ATGCAT 1 cut(s) 288
PctI GAATGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 342
PsuI RGATCY 2 cut(s) 230, 314
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
Sau3AI GATC 3 cut(s) 157, 230, 314
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 67, 95, 157, 201
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 3 cut(s) 54, 241, 326
SsiI CCGC 2 cut(s) 204, 265
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 201
TasI AATT 3 cut(s) 54, 241, 326
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 2 cut(s) 86, 150
Tsp45I GTSAC 2 cut(s) 86, 150
TspRI CASTG 1 cut(s) 28
XapI RAATTY 3 cut(s) 54, 241, 326
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.