RchiOBHm_Chr5g0021501

Vacuolar-sorting receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
15672059 .. 15673664
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30155

Sequence Viewer

Length: 498 bp
ATGTTGGTGTTTATGGACGGTTTGTGGTGGAGACGGTGGGTACTGGGTACTGTGGTGTATCCTGAGAAAGGGTCTACTGGGTGTGAGGCTTTTGAGGGTGATAAGCCTTTCCGGTCTCAGAAGTCTCGCCCCACTATTGTAGTTCTTGATCGTGGCGACAGTGTGTGGAATGCTCAAGAGGCAGGAGCTACAGCCGTTTTAGTGGCTGACAATGTTGAAGAGCCTCTAATTACAATGGACTCCCCAGAGGAGAGCACTGATGCAGATGGTTACATAGAGAAGATTGGAATTCCATCAGCTTTGATAGAGAAATCATTTGGTGACAGCTTGAAGAATGCTGTGAAAAACAGCGAAGATATTGTAGTAAAACTTGACTGGAGAGAGTCACCTGATCAAAGAGTTGAATATGAGTTCTGGACAAACAGCAATGACGTATGCGGGGCTTGCTGTGATGAGAAAATGAGATCTGTCAAAAATTTCAGGGGTCATACTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

4.62

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 15 - 110 1.4e-12 PA domain
VSR_TRX PF25011 134 - 163 2.7e-07 Vacuolar sorting receptor thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024641)

Species Orthologous Gene IDs
pyrus_communis pycom05g22090
rosa_chinensis RchiOBHm_Chr5g0021501
rosa_samantha Rh5CG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 74
AciI CCGC 1 cut(s) 438
AcsI RAATTY 2 cut(s) 288, 475
AfaI GTAC 2 cut(s) 42, 49
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 218, 331, 404
AluBI AGCT 3 cut(s) 188, 299, 327
AluI AGCT 3 cut(s) 188, 299, 327
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 25, 120, 129
ApoI RAATTY 2 cut(s) 288, 475
AsuHPI GGTGA 3 cut(s) 110, 332, 378
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
Bbv12I GWGCWC 1 cut(s) 257
BccI CCATC 2 cut(s) 260, 301
BceAI ACGGC 1 cut(s) 179
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 25, 120, 129
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 69
BglII AGATCT 1 cut(s) 464
BmrI ACTGGG 2 cut(s) 53, 87
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 2 cut(s) 53, 87
BpmI CTGGAG 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 48, 82, 380
Bse3DI GCAATG 1 cut(s) 433
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 54, 131
BseNI ACTGG 3 cut(s) 48, 82, 380
BseRI GAGGAG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 3 cut(s) 25, 120, 129
BsmBI CGTCTC 1 cut(s) 25
BsmI GAATGC 2 cut(s) 175, 340
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 148, 391, 464
BspACI CCGC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 55, 130
BspQI GCTCTTC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 3 cut(s) 48, 82, 380
BssMI GATC 3 cut(s) 148, 391, 464
Bst4CI ACNGT 4 cut(s) 20, 36, 52, 161
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 2 cut(s) 63, 117
BstENI CCTNNNNNAGG 1 cut(s) 66
BstKTI GATC 3 cut(s) 151, 394, 467
BstMAI GTCTC 3 cut(s) 25, 120, 129
BstMBI GATC 3 cut(s) 148, 391, 464
BstMWI GCNNNNNNNGC 2 cut(s) 179, 444
BstSFI CTRYAG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuI GTATCC 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 166, 255
Cac8I GCNNGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 41, 48
CviJI RGCY 9 cut(s) 89, 106, 188, 194, 206, 223, 299, 327, 443
CviKI_1 RGCY 9 cut(s) 89, 106, 188, 194, 206, 223, 299, 327, 443
CviQI GTAC 2 cut(s) 41, 48
DdeI CTNAG 2 cut(s) 63, 117
DpnI GATC 3 cut(s) 150, 393, 466
DpnII GATC 3 cut(s) 148, 391, 464
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 25
FaiI YATR 7 cut(s) 14, 275, 408, 436, 489, 494, 496
FauI CCCGC 1 cut(s) 431
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 397
HapII CCGG 1 cut(s) 112
HinfI GANTC 2 cut(s) 239, 383
HpaII CCGG 1 cut(s) 112
HphI GGTGA 3 cut(s) 110, 332, 378
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 4 cut(s) 62, 146, 176, 415
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4III ACNGT 4 cut(s) 20, 36, 52, 161
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 444
HpyF3I CTNAG 2 cut(s) 63, 117
HpySE526I ACGT 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 3 cut(s) 148, 391, 464
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 185
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 3 cut(s) 269, 320, 384
MalI GATC 3 cut(s) 150, 393, 466
MboI GATC 3 cut(s) 148, 391, 464
MboII GAAGA 4 cut(s) 230, 292, 343, 365
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 3 cut(s) 228, 288, 475
MlyI GAGTC 2 cut(s) 233, 392
MnlI CCTC 5 cut(s) 79, 88, 172, 234, 241
MspI CCGG 1 cut(s) 112
Mva1269I GAATGC 2 cut(s) 175, 340
MwoI GCNNNNNNNGC 2 cut(s) 179, 444
NdeII GATC 3 cut(s) 148, 391, 464
NmuCI GTSAC 2 cut(s) 320, 384
PciSI GCTCTTC 1 cut(s) 213
PctI GAATGC 2 cut(s) 175, 340
PleI GAGTC 2 cut(s) 233, 391
PpsI GAGTC 2 cut(s) 233, 391
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 2 cut(s) 42, 49
RsaNI GTAC 2 cut(s) 41, 48
SapI GCTCTTC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 148, 391, 464
SchI GAGTC 2 cut(s) 233, 392
SduI GDGCHC 1 cut(s) 257
SetI ASST 5 cut(s) 190, 301, 329, 391, 435
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 3 cut(s) 228, 288, 475
SsiI CCGC 1 cut(s) 438
TaaI ACNGT 4 cut(s) 20, 36, 52, 161
TaiI ACGT 1 cut(s) 435
TasI AATT 3 cut(s) 228, 288, 475
TscAI CASTG 2 cut(s) 166, 262
TseFI GTSAC 2 cut(s) 320, 384
Tsp45I GTSAC 2 cut(s) 320, 384
TspRI CASTG 2 cut(s) 166, 262
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 2 cut(s) 288, 475
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.