Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0022518

Physical Location & Seq

Genomic Coordinates Forward (+)

24666888 .. 24667719

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCTTACAAAGCATAACAACATGACCGATGATGAGGGCTGCCTGCTTTTGGGTCGGTTCGTAAAGATCAGAAACCGGCCTAATTGGGTAAACCTGCAGCACTTGACTCGTATCCAACAAGTTAAGTGCATACGACTCCAATTCTCTAAGGCCCTGTTTGGCACACCGGATAAGGCACTGGATAGTACTAATAATATAGAGTACGATGTTTGGTGTCTGTTTGGATTAAATAACCGCCCAAAACCTCGGTATTATTTAGTCGGGTGGAAACACTCCTCTCTCGCTCTCTCCATCCCGCATCACTTGTTCTCTGATTTGAATCCCAGGTTCTTCTCCTCCTCCTTCTCTGTTCCGCCCTCCTGCAACTTCTTCTCCTCCTCCTCCTCCTCCTCCTTTGTTCTGCCCTCCTGCAACTTCTCTGATCACCACAAACGGCGTAAGTGGAGGAAAGAGGACAATGGCGATGGACTGACGAAACTCGAATGGGAGAATGTTGATGGTCTTTGGTGGTCCAGTAATATCTCTTCCCTTGATTTTGAAAGCAATCTATTTTTCAAACCTTTTCCTTGGAATATTGACCAGATGATACGCAATTTGATAGATTTGTATCTTTCTGAGAATCATTTGAATGACAATATTCTTCCTTTTATCTGCAACATGCAACACTTGGGTTCTTGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

228

Amino Acids

26.52

Weight (kDa)

8.47

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022518)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g00410 pycom01g03590 pycom05g22220 pycom05g22240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AciI	CCGC	3 cut(s)	235, 296, 353
AfaI	GTAC	2 cut(s)	187, 203
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	319, 539, 556, 628
AjnI	CCWGG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	77, 150
ApeKI	GCWGC	2 cut(s)	39, 97
AspS9I	GGNCC	2 cut(s)	151, 510
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
BbvI	GCAGC	2 cut(s)	26, 109
BccI	CCATC	3 cut(s)	299, 458, 491
BceAI	ACGGC	1 cut(s)	449
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	40, 98
BlsI	GCNGC	2 cut(s)	41, 99
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	151, 510
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	307
BsaBI	GATNNNNATC	2 cut(s)	318, 606
BsaJI	CCNNGG	3 cut(s)	245, 323, 566
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	183, 513
Bse8I	GATNNNNATC	2 cut(s)	318, 606
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	245, 323, 566
BseGI	GGATG	1 cut(s)	291
BseJI	GATNNNNATC	2 cut(s)	318, 606
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	183, 513
BseRI	GAGGAG	9 cut(s)	265, 325, 328, 364, 367, 370, 373, 376, 379
BseXI	GCAGC	2 cut(s)	26, 109
BshFI	GGCC	2 cut(s)	79, 152
BsiSI	CCGG	2 cut(s)	76, 167
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	2 cut(s)	79, 152
Bsp143I	GATC	2 cut(s)	66, 421
BspACI	CCGC	3 cut(s)	235, 296, 353
BspANI	GGCC	2 cut(s)	79, 152
BspCNI	CTCAG	1 cut(s)	607
BspMAI	CTGCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	183, 513
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	245, 323, 566
BssMI	GATC	2 cut(s)	66, 421
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	147, 615
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	69, 424
BstMBI	GATC	2 cut(s)	66, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	26, 109
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	79, 152
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	151, 510
Csp6I	GTAC	2 cut(s)	186, 202
CviAII	CATG	2 cut(s)	22, 658
CviJI	RGCY	3 cut(s)	39, 79, 152
CviKI_1	RGCY	3 cut(s)	39, 79, 152
CviQI	GTAC	2 cut(s)	186, 202
DdeI	CTNAG	2 cut(s)	147, 615
DpnI	GATC	2 cut(s)	68, 423
DpnII	GATC	2 cut(s)	66, 421
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	2 cut(s)	25, 661
FaiI	YATR	5 cut(s)	15, 23, 131, 197, 659
FatI	CATG	2 cut(s)	21, 657
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	40, 98
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	40, 98
GluI	GCNGC	2 cut(s)	40, 98
HaeIII	GGCC	2 cut(s)	79, 152
HapII	CCGG	2 cut(s)	76, 167
Hin1II	CATG	2 cut(s)	25, 661
HinfI	GANTC	4 cut(s)	106, 135, 319, 619
HpaII	CCGG	2 cut(s)	76, 167
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	71, 313, 421, 616
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	6 cut(s)	97, 129, 363, 411, 654, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	147, 615
Hsp92II	CATG	2 cut(s)	25, 661
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	66, 421
Lsp1109I	GCAGC	2 cut(s)	26, 109
LweI	GCATC	1 cut(s)	307
MalI	GATC	2 cut(s)	68, 423
MboI	GATC	2 cut(s)	66, 421
MboII	GAAGA	4 cut(s)	322, 361, 516, 632
MluCI	AATT	3 cut(s)	82, 140, 592
MlyI	GAGTC	2 cut(s)	100, 129
MmeI	TCCRAC	1 cut(s)	139
MseI	TTAA	2 cut(s)	123, 227
MslI	CAYNNNNRTG	1 cut(s)	627
MspI	CCGG	2 cut(s)	76, 167
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	66, 421
NlaIII	CATG	2 cut(s)	25, 661
NspI	RCATGY	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	319, 619
PkrI	GCNGC	2 cut(s)	41, 99
PleI	GAGTC	2 cut(s)	100, 129
PpsI	GAGTC	2 cut(s)	100, 129
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	151, 510
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	187, 203
RsaNI	GTAC	2 cut(s)	186, 202
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	123, 227
SatI	GCNGC	2 cut(s)	40, 98
Sau3AI	GATC	2 cut(s)	66, 421
Sau96I	GGNCC	2 cut(s)	151, 510
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	2 cut(s)	100, 129
ScrFI	CCNGG	1 cut(s)	325
SetI	ASST	4 cut(s)	96, 247, 329, 562
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	3 cut(s)	82, 140, 592
SsiI	CCGC	3 cut(s)	235, 296, 353
SspI	AATATT	2 cut(s)	574, 637
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	566
TaqI	TCGA	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	82, 140, 592
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	319, 619
Tru1I	TTAA	2 cut(s)	123, 227
Tru9I	TTAA	2 cut(s)	123, 227
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	2 cut(s)	39, 97
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	510
XceI	RCATGY	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.