pycom05g23920

threonine-tRNA ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25578406 .. 25578642
237 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGAAGATTTGTGGAAAAAGATCCACATAGAGCGTGGTTATGATCTGCTGTATACTCCACATGTTGCAAAGGTGAACCTGTGGCAGATAAGTGGTCATCTGGATTACTACAAGGAGAATGTGTATGATCAAATGAATGTTGAGGATGAACTTTATCAGCTTCGACCGATGAACTGCCCCTTTCATATCTTGGTTTACAAAAGGAAGCCTCACTCATATCATGAATTTCCTATTTGA

Protein Analysis

79

Amino Acids

9.65

Weight (kDa)

6.27

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022333)

Species Orthologous Gene IDs
malus_domestica MD00G1024100.v1.1 MD15G1401600.v1.1
pyrus_communis pycom05g23920 pycom05g24170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 61
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
AlwI GGATC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 85
BclI TGATCA 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
BseGI GGATG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 167
Bsp143I GATC 3 cut(s) 21, 43, 127
BspHI TCATGA 1 cut(s) 220
BspPI GGATC 1 cut(s) 16
BssMI GATC 3 cut(s) 21, 43, 127
BssNAI GTATAC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 24, 46, 130
BstMBI GATC 3 cut(s) 21, 43, 127
BstMCI CGRYCG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BstZ17I GTATAC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 151
CciI TCATGA 1 cut(s) 220
CviAII CATG 2 cut(s) 62, 221
CviJI RGCY 2 cut(s) 160, 208
CviKI_1 RGCY 2 cut(s) 160, 208
DpnI GATC 3 cut(s) 23, 45, 129
DpnII GATC 3 cut(s) 21, 43, 127
FaeI CATG 2 cut(s) 65, 224
FaiI YATR 8 cut(s) 29, 42, 54, 63, 126, 186, 217, 222
FatI CATG 2 cut(s) 61, 220
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 53
FokI GGATG 1 cut(s) 158
Hin1II CATG 2 cut(s) 65, 224
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 54, 76, 196
Hpy188III TCNNGA 2 cut(s) 101, 221
Hpy8I GTNNAC 3 cut(s) 54, 76, 196
HpyCH4V TGCA 1 cut(s) 68
Hsp92II CATG 2 cut(s) 65, 224
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 21, 43, 127
LpnPI CCDG 2 cut(s) 86, 92
MalI GATC 3 cut(s) 23, 45, 129
MboI GATC 3 cut(s) 21, 43, 127
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 21
MluCI AATT 1 cut(s) 224
MnlI CCTC 2 cut(s) 136, 219
NdeII GATC 3 cut(s) 21, 43, 127
NlaIII CATG 2 cut(s) 65, 224
NspI RCATGY 1 cut(s) 65
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 61
PscI ACATGT 1 cut(s) 61
PsuI RGATCY 1 cut(s) 21
Sau3AI GATC 3 cut(s) 21, 43, 127
SetI ASST 3 cut(s) 75, 81, 162
SgeI CNNG 7 cut(s) 47, 74, 91, 113, 124, 202, 233
Sse9I AATT 1 cut(s) 224
TaqI TCGA 1 cut(s) 163
TaqII GACCGA 1 cut(s) 181
TasI AATT 1 cut(s) 224
TspDTI ATGAA 5 cut(s) 149, 162, 173, 185, 237
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.