Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024453

Physical Location & Seq

Genomic Coordinates Forward (+)

28734075 .. 28738092

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCAAAGAGAAAAGTGGCAGCGGCAGGGCCAATAAAAGAAAGTTCGCAGACAACCAAAGTAAAAGAAACAGACGTTTCCCTTTCGGCATGGAAAATGAAACAGGAATCCATTGTGGCAAATTATGTTATTGTCTGGCCGTTGTACGGTCCTGCTCCGGATCGGGAGTGCTTGTTCGCTCCTGTTTTGGAAATGTTGGAGTTTGTCAGGTCCCCAAGTGGAGAGATTCGGACCGTCCCTTTTCTTGGTAGCTTGCAGGCATACTGCACCAATTACAAGTACATTCTTCAATTTGGTGACCCTTTGAATCGTGTTAGGACGGCCATCTTTGCTTGTGCAGTGCCAATGGAAAGAATATATCAATCCAATCCTTCCAAGTTCGAATACTTGTACAGTTTGGTAAACTTTGATGTCAAAACAAATACTCTTTTCAAGAGTACCTCCGCTTCTCTTGTTTGGCTCACAAGATACATGGATTTTTTGGTAGAGCTGTTTCGGAACTTACGGGAGCATCCTCCAGATTGGGTTACGATTCAGGCTGTTTATAATGCCTATGCCAAGACCCTGATAAAATGGCATGATGAAAAAATTGTACTGACTTTGATTCCCCTTCATTTATTTGCTGACCTAGCATTATTCGTACTAATCTTTCCCTTTGAATGTCCTATTTCTATAAACATGGATTTTGTGGTAGAACTGTTTCGTAACTTGCTGGAGCGTCCAGAGTGGTTTGCAATTGAGGCTTGTAAAGATTCCCACGGCAAGACCCTGAAAATATGGCTTGAACGACAGAAATGGTTTAATCCAAATCTTCCAATGAAAAGAGTCATACCGGCGCTTTCTATGGACAGAGAGAAGTTCATGGAGAAGATCGAAGGCAATGGCGATGTGATGGGTGATATAAAGAAATTTTGCTCTATCTTTACTCCTCTAATTAAAGAGATTGACAAGTTTTTGGCTAGTTGGGGCTCGGATAAATCTAAGCTGCTTATTGATGGGGAGGAGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006687 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006869 GO:0008150 GO:0008152 GO:0008289 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0017089 GO:0019637 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0061024 GO:0070013 GO:0070273 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090407 GO:0097001 GO:0097367 GO:0098588 GO:0098791 GO:0120009 GO:0120013 GO:1901135 GO:1901264 GO:1901564 GO:1901576 GO:1901981 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

GLTP PH

Protein Analysis

338

Amino Acids

38.94

Weight (kDa)

8.09

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	99 - 194	5.1e-12	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024453)

Species	Orthologous Gene IDs
malus_domestica	MD05G1300600.v1.1 MD05G1302000.v1.1
pyrus_communis	pycom05g27850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	2 cut(s)	23, 444
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	137, 321
AcsI	RAATTY	1 cut(s)	908
AfaI	GTAC	6 cut(s)	146, 281, 392, 439, 594, 642
AfiI	CCNNNNNNNGG	2 cut(s)	146, 245
AgsI	TTSAA	5 cut(s)	290, 307, 433, 659, 785
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	3 cut(s)	252, 490, 985
AluI	AGCT	3 cut(s)	252, 490, 985
AlwI	GGATC	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	3 cut(s)	29, 137, 321
ApeKI	GCWGC	2 cut(s)	20, 985
ApoI	RAATTY	1 cut(s)	908
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	4 cut(s)	29, 149, 210, 231
AsuHPI	GGTGA	2 cut(s)	308, 908
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	3 cut(s)	149, 210, 231
BanII	GRGCYC	1 cut(s)	971
BarI	GAAGNNNNNNTAC	2 cut(s)	430, 462
BbvI	GCAGC	2 cut(s)	32, 972
BccI	CCATC	3 cut(s)	332, 886, 989
BceAI	ACGGC	3 cut(s)	124, 336, 775
BfaI	CTAG	2 cut(s)	629, 960
BfoI	RGCGCY	1 cut(s)	839
BisI	GCNGC	3 cut(s)	21, 24, 986
BlsI	GCNGC	3 cut(s)	22, 25, 987
Bme18I	GGWCC	3 cut(s)	149, 210, 231
BmgT120I	GGNCC	4 cut(s)	29, 149, 210, 231
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	2 cut(s)	501, 734
Bpu14I	TTCGAA	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	757
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 245
Bse118I	RCCGGY	1 cut(s)	832
Bse3DI	GCAATG	1 cut(s)	886
BseAI	TCCGGA	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	146, 245
BseMI	GCAATG	1 cut(s)	886
BseRI	GAGGAG	1 cut(s)	918
BseXI	GCAGC	2 cut(s)	32, 972
BsgI	GTGCAG	2 cut(s)	250, 357
BshFI	GGCC	3 cut(s)	31, 139, 323
BsiSI	CCGG	2 cut(s)	158, 833
BslFI	GGGAC	2 cut(s)	196, 221
BslI	CCNNNNNNNGG	2 cut(s)	146, 245
BsmFI	GGGAC	2 cut(s)	196, 221
BsnI	GGCC	3 cut(s)	31, 139, 323
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp13I	TCCGGA	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	160, 870
BspACI	CCGC	2 cut(s)	23, 444
BspANI	GGCC	3 cut(s)	31, 139, 323
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	886
BsrFI	RCCGGY	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	2 cut(s)	160, 870
Bst4CI	ACNGT	4 cut(s)	149, 235, 395, 699
BstAUI	TGTACA	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	254, 258
BstDEI	CTNAG	1 cut(s)	981
BstDSI	CCRYGG	1 cut(s)	757
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	2 cut(s)	163, 873
BstMBI	GATC	2 cut(s)	160, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 629, 740
BstPI	GGTNACC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	32, 972
BsuRI	GGCC	3 cut(s)	31, 139, 323
BtgI	CCRYGG	1 cut(s)	757
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	254, 258
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	4 cut(s)	29, 149, 210, 231
CpoI	CGGWCCG	1 cut(s)	231
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	6 cut(s)	145, 280, 391, 438, 593, 641
CspI	CGGWCCG	1 cut(s)	231
CviAII	CATG	5 cut(s)	90, 472, 578, 679, 862
CviQI	GTAC	6 cut(s)	145, 280, 391, 438, 593, 641
DdeI	CTNAG	1 cut(s)	981
DpnI	GATC	2 cut(s)	162, 872
DpnII	GATC	2 cut(s)	160, 870
EaeI	YGGCCR	2 cut(s)	137, 321
Eco24I	GRGCYC	1 cut(s)	971
Eco47I	GGWCC	3 cut(s)	149, 210, 231
Eco91I	GGTNACC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	971
FaeI	CATG	5 cut(s)	93, 475, 581, 682, 865
FaqI	GGGAC	2 cut(s)	196, 221
FatI	CATG	5 cut(s)	89, 471, 577, 678, 861
Fnu4HI	GCNGC	3 cut(s)	21, 24, 986
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	3 cut(s)	21, 24, 986
FspBI	CTAG	2 cut(s)	629, 960
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	3 cut(s)	21, 24, 986
GsuI	CTGGAG	2 cut(s)	501, 734
HaeII	RGCGCY	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	31, 139, 323
HapII	CCGG	2 cut(s)	158, 833
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	5 cut(s)	93, 475, 581, 682, 865
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HinfI	GANTC	7 cut(s)	107, 226, 307, 532, 604, 752, 825
HpaII	CCGG	2 cut(s)	158, 833
HphI	GGTGA	2 cut(s)	308, 908
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	231, 498, 973
Hpy188III	TCNNGA	6 cut(s)	158, 164, 433, 518, 722, 1011
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	381, 620, 869
HpyCH4III	ACNGT	4 cut(s)	149, 235, 395, 699
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	256, 267, 338, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 629, 740
HpyF3I	CTNAG	1 cut(s)	981
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	93, 475, 581, 682, 865
HspAI	GCGC	1 cut(s)	836
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	160, 870
LmnI	GCTCC	4 cut(s)	160, 184, 508, 715
Lsp1109I	GCAGC	2 cut(s)	32, 972
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	629, 960
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	296, 526, 704
MalI	GATC	2 cut(s)	162, 872
MboI	GATC	2 cut(s)	160, 870
MboII	GAAGA	3 cut(s)	278, 803, 880
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	7 cut(s)	121, 271, 290, 588, 735, 908, 933
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	451, 525, 733, 939, 994, 997
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	2 cut(s)	801, 936
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	158, 833
MunI	CAATTG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	329, 629, 740
NdeII	GATC	2 cut(s)	160, 870
NlaIII	CATG	5 cut(s)	93, 475, 581, 682, 865
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	6 cut(s)	107, 226, 307, 532, 604, 752
PkrI	GCNGC	3 cut(s)	22, 25, 987
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PpuMI	RGGWCCY	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	4 cut(s)	29, 149, 210, 231
PspPPI	RGGWCCY	1 cut(s)	210
RsaI	GTAC	6 cut(s)	146, 281, 392, 439, 594, 642
RsaNI	GTAC	6 cut(s)	145, 280, 391, 438, 593, 641
Rsr2I	CGGWCCG	1 cut(s)	231
RsrII	CGGWCCG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	801, 936
SatI	GCNGC	3 cut(s)	21, 24, 986
Sau3AI	GATC	2 cut(s)	160, 870
Sau96I	GGNCC	4 cut(s)	29, 149, 210, 231
SchI	GAGTC	1 cut(s)	834
SduI	GDGCHC	1 cut(s)	971
SetI	ASST	7 cut(s)	78, 212, 254, 443, 492, 630, 987
SfaNI	GCATC	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	3 cut(s)	149, 210, 231
Sse9I	AATT	7 cut(s)	121, 271, 290, 588, 735, 908, 933
SsiI	CCGC	2 cut(s)	23, 444
SspMI	CTAG	2 cut(s)	629, 960
TaaI	ACNGT	4 cut(s)	149, 235, 395, 699
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	381, 873
TasI	AATT	7 cut(s)	121, 271, 290, 588, 735, 908, 933
TatI	WGTACW	3 cut(s)	279, 390, 592
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	6 cut(s)	107, 226, 307, 532, 604, 752
Tru1I	TTAA	2 cut(s)	801, 936
Tru9I	TTAA	2 cut(s)	801, 936
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	20, 985
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	113, 597, 602, 833, 850
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	3 cut(s)	149, 210, 231
XapI	RAATTY	1 cut(s)	908
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	629, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.