pycom06g02370

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
2835864 .. 2837156
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02370.1

Sequence Viewer

Length: 1176 bp
ATGGTGGGTACCAACCAAACATTGCAACATTTGGAGCTCGATCAGTACGATGAGGAGCACAGCAAGGAAGGGCTCGCAAAGGTGGCGTTTTTCAGCTACTTCTACCTGGCTATGAACCTCGGTTCCCTTTTCTCCAACACCATATTAGGATTCTTTGAGGATGAAGGAGTTTGGGCTATTGGGTTCTGGGCATCCGCAGCGTCAGCATTTGCAGCATTGGTCTTGTTCCTTGGTGGGACTGCTAGGTACAGGCACTTCAACCCCAATGGCAATCCCCTCTCGAGGTTTTGCCAAGTCTTAGTTGCAGCGATGAAGAAATGCAGGGCGCATATGCCACAAGGTGAAGAGGACTTGTACGATGAGAGTAACAATGAGTCTTCGAATAGCAACCGAAAGATCCTATACACCCATGGATTCAAGTTCTTGGACAGGGCTGCATATATCTCATCAAAAGATTTAGACTACCAGAAGCAGGGCATTCGCAGCCCGTGGCGTCTCTGCCCGATCTCACAAGTGGAAGAAGTGAAATGCATTTTAAGATTACTCCCAATATGGCTCTGCACAATTATCTACTCAGTCGTTTTTACACAAATGGCTTCCCTCTTTGTAGAGCAGGGAGCTGCCATGAAAACTACCATTCCAAACTTCAGCATCCCACCAGCGAGCATGTCCAGCTTCGACATCATCAGCGTGGCAGTTTTCATTTTCATTTACCGACGGATTATAGACCCGTTTGTAGGCAGAATAAAGAAATCAGATGCTAAAGGGCTTACCGAGCTTCAACGAATGGGTGTTGGCCTTGTTATAGCAGTCCTGGCAATGCTTTCAGCAGGAATCGTTGAGTGCTATAGACTAAAGTATGCCGATAAAGAATGCCCGCATTGTGACGGCTCAAGCTCCTTAAGCATCTTCTGGCAAATTCCTCAGTATGCATGCATAGGAGCTTCAGAAGTTTTCATGTATGTGGGTCAACTGGAGTTCTTCAATGCACAAACACCAGATGGACTGAAGAGCTTTGGAAGCGCCCTGTGCATGACATCCATCTCGCTCGGTAACTACTTTAGCACCTTTCTCGTGAGCGTGGTCATGAAGTTCTCGACTGAGGATCAATCATGCCCGGATCGATCCCCGGAAACCTCAACAGGGGTCACCTTGATAGGTTTTACTTCCTCTTAG

Protein Analysis

392

Amino Acids

43.53

Weight (kDa)

5.92

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 14 - 367 1.9e-73 POT family
MFS_1 PF07690 31 - 352 2.1e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 2 cut(s) 195, 878
AclWI GGATC 4 cut(s) 391, 1113, 1119, 1128
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 3 cut(s) 631, 930, 1028
AcyI GRCGYC 1 cut(s) 493
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 4 cut(s) 10, 47, 248, 356
AfiI CCNNNNNNNGG 4 cut(s) 282, 472, 737, 1143
AflII CTTAAG 1 cut(s) 901
AgsI TTSAA 4 cut(s) 259, 418, 782, 985
AjnI CCWGG 2 cut(s) 105, 813
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 8 cut(s) 37, 96, 620, 675, 778, 897, 944, 1014
AluI AGCT 8 cut(s) 37, 96, 620, 675, 778, 897, 944, 1014
Alw21I GWGCWC 2 cut(s) 39, 60
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 4 cut(s) 391, 1113, 1119, 1128
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 796
ApeKI GCWGC 6 cut(s) 197, 212, 305, 434, 483, 620
ApoI RAATTY 1 cut(s) 918
Asp718I GGTACC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 328, 1025
AsuC2I CCSGG 2 cut(s) 1118, 1130
AsuHPI GGTGA 2 cut(s) 353, 1141
AsuII TTCGAA 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 280
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 39, 75
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BauI CACGAG 1 cut(s) 1073
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 39, 60
BbvI GCAGC 6 cut(s) 209, 224, 317, 421, 495, 607
BccI CCATC 2 cut(s) 995, 1049
BceAI ACGGC 1 cut(s) 904
BcgI CGANNNNNNTGC 4 cut(s) 461, 495, 1054, 1088
BciT130I CCWGG 2 cut(s) 107, 815
BcnI CCSGG 2 cut(s) 1118, 1130
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 1 cut(s) 1026
BfrI CTTAAG 1 cut(s) 901
BisI GCNGC 6 cut(s) 198, 213, 306, 435, 484, 621
BlsI GCNGC 6 cut(s) 199, 214, 307, 436, 485, 622
Bme1390I CCNGG 4 cut(s) 107, 815, 1118, 1130
BmeT110I CYCGRG 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 10, 124
BmrFI CCNGG 4 cut(s) 107, 815, 1118, 1130
BmsI GCATC 4 cut(s) 200, 660, 748, 915
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 995
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 877
BpuMI CCSGG 2 cut(s) 1118, 1130
Bsa29I ATCGAT 1 cut(s) 1123
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 5 cut(s) 118, 229, 409, 488, 1128
Bsc4I CCNNNNNNNGG 4 cut(s) 282, 472, 737, 1143
Bse1I ACTGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 20, 825
BseBI CCWGG 2 cut(s) 107, 815
BseCI ATCGAT 1 cut(s) 1123
BseDI CCNNGG 5 cut(s) 118, 229, 409, 488, 1128
BseGI GGATG 4 cut(s) 166, 191, 651, 1037
BseLI CCNNNNNNNGG 4 cut(s) 282, 472, 737, 1143
BseMI GCAATG 2 cut(s) 20, 825
BseMII CTCAG 3 cut(s) 588, 938, 1092
BseNI ACTGG 1 cut(s) 978
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 6 cut(s) 209, 224, 317, 421, 495, 607
BsgI GTGCAG 1 cut(s) 544
BshFI GGCC 1 cut(s) 798
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 1123
BsiHKAI GWGCWC 2 cut(s) 39, 60
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 2 cut(s) 1118, 1130
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 4 cut(s) 282, 472, 737, 1143
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 2 cut(s) 477, 878
BsnI GGCC 1 cut(s) 798
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 39, 60, 75
Bsp143I GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 2 cut(s) 195, 878
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 3 cut(s) 587, 937, 1093
BspDI ATCGAT 1 cut(s) 1123
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 2 cut(s) 10, 124
BspPI GGATC 4 cut(s) 391, 1113, 1119, 1128
BspQI GCTCTTC 1 cut(s) 1004
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 901
BsrDI GCAATG 2 cut(s) 20, 825
BsrI ACTGG 1 cut(s) 978
BssECI CCNNGG 5 cut(s) 118, 229, 409, 488, 1128
BssMI GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
BssNI GRCGYC 1 cut(s) 493
BssSI CACGAG 1 cut(s) 1073
BssT1I CCWWGG 2 cut(s) 229, 409
Bst2BI CACGAG 1 cut(s) 1073
Bst2UI CCWGG 2 cut(s) 107, 815
Bst6I CTCTTC 2 cut(s) 339, 1004
BstACI GRCGYC 1 cut(s) 493
BstAFI CTTAAG 1 cut(s) 901
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 4 cut(s) 75, 664, 878, 934
BstDEI CTNAG 5 cut(s) 298, 574, 924, 1101, 1173
BstDSI CCRYGG 2 cut(s) 409, 488
BstEII GGTNACC 1 cut(s) 1147
BstF5I GGATG 4 cut(s) 166, 191, 651, 1037
BstH2I RGCGCY 1 cut(s) 1026
BstHHI GCGC 2 cut(s) 328, 1025
BstKTI GATC 6 cut(s) 43, 399, 507, 1108, 1123, 1127
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
BstNI CCWGG 2 cut(s) 107, 815
BstNSI RCATGY 2 cut(s) 670, 936
BstPI GGTNACC 1 cut(s) 1147
BstSCI CCNGG 4 cut(s) 105, 813, 1116, 1128
BstSFI CTRYAG 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 209, 224, 317, 421, 495, 607
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 1123
BsuRI GGCC 1 cut(s) 798
BsuTUI ATCGAT 1 cut(s) 1123
BtgI CCRYGG 2 cut(s) 409, 488
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 4 cut(s) 166, 191, 651, 1037
Cac8I GCNNGC 4 cut(s) 75, 664, 878, 934
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 2 cut(s) 328, 1025
ClaI ATCGAT 1 cut(s) 1123
CseI GACGC 2 cut(s) 189, 482
Csp6I GTAC 4 cut(s) 9, 46, 247, 355
CviAII CATG 8 cut(s) 410, 625, 667, 933, 958, 1033, 1087, 1113
CviQI GTAC 4 cut(s) 9, 46, 247, 355
DdeI CTNAG 5 cut(s) 298, 574, 924, 1101, 1173
DpnI GATC 6 cut(s) 42, 398, 506, 1107, 1122, 1126
DpnII GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
DraIII CACNNNGTG 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 339, 1004
EarI CTCTTC 2 cut(s) 339, 1004
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 229, 409
Eco24I GRGCYC 2 cut(s) 39, 75
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 3 cut(s) 631, 930, 1028
Eco88I CYCGRG 1 cut(s) 280
Eco91I GGTNACC 1 cut(s) 1147
EcoICRI GAGCTC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 1147
EcoRII CCWGG 2 cut(s) 105, 813
EcoT14I CCWWGG 2 cut(s) 229, 409
EcoT22I ATGCAT 3 cut(s) 533, 934, 938
EcoT38I GRGCYC 2 cut(s) 39, 75
ErhI CCWWGG 2 cut(s) 229, 409
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 8 cut(s) 413, 628, 670, 936, 961, 1036, 1090, 1116
FaqI GGGAC 1 cut(s) 250
FatI CATG 8 cut(s) 409, 624, 666, 932, 957, 1032, 1086, 1112
FauI CCCGC 1 cut(s) 885
FauNDI CATATG 1 cut(s) 330
Fnu4HI GCNGC 6 cut(s) 198, 213, 306, 435, 484, 621
FokI GGATG 4 cut(s) 173, 178, 638, 1024
FriOI GRGCYC 2 cut(s) 39, 75
Fsp4HI GCNGC 6 cut(s) 198, 213, 306, 435, 484, 621
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 327, 1024
GluI GCNGC 6 cut(s) 198, 213, 306, 435, 484, 621
GsuI CTGGAG 1 cut(s) 995
HaeII RGCGCY 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 798
HapII CCGG 2 cut(s) 1118, 1130
HgaI GACGC 2 cut(s) 189, 482
HhaI GCGC 2 cut(s) 328, 1025
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 8 cut(s) 413, 628, 670, 936, 961, 1036, 1090, 1116
Hin6I GCGC 2 cut(s) 326, 1023
HinP1I GCGC 2 cut(s) 326, 1023
HincII GTYRAC 1 cut(s) 971
HindII GTYRAC 1 cut(s) 971
HinfI GANTC 4 cut(s) 150, 374, 414, 834
HpaII CCGG 2 cut(s) 1118, 1130
HphI GGTGA 2 cut(s) 353, 1141
Hpy166II GTNNAC 1 cut(s) 971
Hpy188I TCNGA 2 cut(s) 757, 949
Hpy188III TCNNGA 4 cut(s) 280, 1075, 1087, 1096
Hpy8I GTNNAC 1 cut(s) 971
Hpy99I CGWCG 1 cut(s) 720
HpyAV CCTTC 2 cut(s) 62, 158
HpyF3I CTNAG 5 cut(s) 298, 574, 924, 1101, 1173
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 8 cut(s) 413, 628, 670, 936, 961, 1036, 1090, 1116
HspAI GCGC 2 cut(s) 326, 1023
KpnI GGTACC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
LguI GCTCTTC 1 cut(s) 1004
LmnI GCTCC 5 cut(s) 34, 55, 617, 902, 941
Lsp1109I GCAGC 6 cut(s) 209, 224, 317, 421, 495, 607
LweI GCATC 4 cut(s) 200, 660, 748, 915
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 4 cut(s) 365, 884, 1052, 1147
MalI GATC 6 cut(s) 42, 398, 506, 1107, 1122, 1126
MboI GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
MboII GAAGA 7 cut(s) 325, 356, 369, 530, 901, 973, 1021
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 3 cut(s) 39, 60, 75
MluCI AATT 2 cut(s) 564, 918
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 159
Mph1103I ATGCAT 3 cut(s) 533, 934, 938
MseI TTAA 2 cut(s) 536, 902
MslI CAYNNNNRTG 2 cut(s) 689, 962
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 2 cut(s) 1118, 1130
MspR9I CCNGG 4 cut(s) 107, 815, 1118, 1130
Mva1269I GAATGC 2 cut(s) 477, 878
MvaI CCWGG 2 cut(s) 107, 815
NciI CCSGG 2 cut(s) 1118, 1130
NcoI CCATGG 1 cut(s) 409
NdeI CATATG 1 cut(s) 330
NdeII GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
NlaIII CATG 8 cut(s) 413, 628, 670, 936, 961, 1036, 1090, 1116
NlaIV GGNNCC 2 cut(s) 10, 124
NmuCI GTSAC 2 cut(s) 884, 1147
NsiI ATGCAT 3 cut(s) 533, 934, 938
NspI RCATGY 2 cut(s) 670, 936
NspV TTCGAA 1 cut(s) 380
PaeI GCATGC 1 cut(s) 936
PaeR7I CTCGAG 1 cut(s) 280
PagI TCATGA 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 1004
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 477, 878
PfeI GAWTC 3 cut(s) 150, 414, 834
PkrI GCNGC 6 cut(s) 199, 214, 307, 436, 485, 622
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 105, 813
PspEI GGTNACC 1 cut(s) 1147
PspGI CCWGG 2 cut(s) 105, 813
PspN4I GGNNCC 2 cut(s) 10, 124
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 4 cut(s) 10, 47, 248, 356
RsaNI GTAC 4 cut(s) 9, 46, 247, 355
RseI CAYNNNNRTG 2 cut(s) 689, 962
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 1004
SaqAI TTAA 2 cut(s) 536, 902
SatI GCNGC 6 cut(s) 198, 213, 306, 435, 484, 621
Sau3AI GATC 6 cut(s) 40, 396, 504, 1105, 1120, 1124
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 4 cut(s) 107, 815, 1118, 1130
SduI GDGCHC 3 cut(s) 39, 60, 75
SfaNI GCATC 4 cut(s) 200, 660, 748, 915
SfcI CTRYAG 1 cut(s) 847
Sfr274I CTCGAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 689, 962
SmlI CTYRAG 3 cut(s) 280, 892, 901
SmoI CTYRAG 3 cut(s) 280, 892, 901
SphI GCATGC 1 cut(s) 936
Sse9I AATT 2 cut(s) 564, 918
SsiI CCGC 2 cut(s) 195, 878
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 105, 813, 1116, 1128
StyI CCWWGG 2 cut(s) 229, 409
TaqI TCGA 6 cut(s) 39, 281, 380, 678, 1097, 1123
TasI AATT 2 cut(s) 564, 918
TfiI GAWTC 3 cut(s) 150, 414, 834
Tru1I TTAA 2 cut(s) 536, 902
Tru9I TTAA 2 cut(s) 536, 902
TseFI GTSAC 2 cut(s) 884, 1147
TseI GCWGC 6 cut(s) 197, 212, 305, 434, 483, 620
Tsp45I GTSAC 2 cut(s) 884, 1147
TspDTI ATGAA 8 cut(s) 128, 177, 326, 641, 691, 697, 946, 1103
TspGWI ACGGA 1 cut(s) 733
Vha464I CTTAAG 1 cut(s) 901
XapI RAATTY 1 cut(s) 918
XceI RCATGY 2 cut(s) 670, 936
XhoI CTCGAG 1 cut(s) 280
XspI CTAG 1 cut(s) 243
Zsp2I ATGCAT 3 cut(s) 533, 934, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.