Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030959.1

Orthogroup ID

OG0010711

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1567

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1079 bp

tgaaccaaggtctggctaccctagcattctttggagttggggtgaacctggtccttttcttaaccagagtgttgcaacaaaacaatgcgacggcagctaacagtgtgagcaaatggaccggaaccgtctacatcttctccctagttggtgctttcctcagtgattcttattggggacgctataaaacctgtgccatctttcaaatcatatttgtcatagggctggcatcattgtcactatcatcgcaactcttcttactgaggcccaaaggttgtgggagccaagaaaatccatgtggaactcatgaaagctaccaaattgtgttattctacctctccatctacctcattgccctaggaaatggagggtaccaaccaaacattgcaacatttggagctgatcagtttgatgaagaggaccgcagggaaggacactcaaaggtggcatttttcagctacttctacttggcaatgaacctaggctcccttttctccaacaccatattggggtacttcgaggatgaaggaatttgggcaattgggttctgggcgtccactgcatctgcatttgcagcattggtcctgtttcttatagggactcctaggtacaggcacttcaaaccaaatggtaaccctcttgcaaggttttgccaagtcttagttgctgctgtgaaaaaaggcaaagtagagatgccatcaggtggagaggagctatacacagaggaaaggaaggagtcttccatgaatggcaaccgaaaaatcctctacacccatgggttcaagttcctggacagggcagcatatatctcatcaagagatttagacaaccagaagcaaggtctccacaacccatggcgtctctgcccaattacacaagtggaagaagttaaatgcattctaaggttactcccaatttggctgtgcaccattctctattcagtggtttttacacaaatggcttctctgtttgtggagcaaggagctgctatgaaaaccacagtttcaaacttccgcattccgccagcaagcatgtctagctttgatatcctcagtgtggcagttttcattttcttttaccgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

359

Amino Acids

40.16

Weight (kDa)

8.74

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32450
fragaria_vesca	FvH4_5g21490
malus_domestica	MD06G1029400.v1.1 MD16G1277800.v1.1
prunus_persica	Prupe.5G042300_v2.0.a1
pyrus_communis	pycom06g02370 pycom16g24760 pycom16g24770
rosa_chinensis	RchiOBHm_Chr7g0208891
rosa_laevigata	RLG00000003186
rosa_multiflora	Rmu_sc0000532.1_g000007 Rmu_sc0006433.1_g000001 Rmu_sc0016359.1_g000003 Rmu_sc0030959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250070
rosa_rugosa	Rorug07G0107200
rosa_samantha	Rh7AG242200 Rh7BG237000 Rh7DG248100
rosa_wichuraiana	Rw7G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AccB7I	CCANNNNNTGG	2 cut(s)	12, 700
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	4 cut(s)	420, 1011, 1018, 1077
AcsI	RAATTY	1 cut(s)	527
AcyI	GRCGYC	2 cut(s)	550, 855
AfaI	GTAC	3 cut(s)	370, 511, 607
AfiI	CCNNNNNNNGG	5 cut(s)	12, 506, 700, 792, 1053
AgsI	TTSAA	4 cut(s)	202, 618, 780, 1004
AjnI	CCWGG	2 cut(s)	47, 785
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
AluBI	AGCT	7 cut(s)	97, 311, 397, 455, 711, 982, 1037
AluI	AGCT	7 cut(s)	97, 311, 397, 455, 711, 982, 1037
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	2 cut(s)	844, 862
Alw44I	GTGCAC	1 cut(s)	921
AoxI	GGCC	1 cut(s)	262
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	5 cut(s)	94, 571, 664, 796, 982
ApoI	RAATTY	1 cut(s)	527
Asp718I	GGTACC	1 cut(s)	368
AspA2I	CCTAGG	3 cut(s)	354, 477, 601
AspS9I	GGNCC	5 cut(s)	51, 116, 263, 417, 579
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	4 cut(s)	51, 116, 417, 579
AvrII	CCTAGG	3 cut(s)	354, 477, 601
BaeGI	GKGCMC	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	5 cut(s)	106, 583, 651, 808, 969
BccI	CCATC	3 cut(s)	202, 346, 702
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	49, 787
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	844, 862
BfaI	CTAG	6 cut(s)	22, 142, 355, 478, 602, 1034
BisI	GCNGC	5 cut(s)	95, 572, 665, 797, 983
BlnI	CCTAGG	3 cut(s)	354, 477, 601
BlsI	GCNGC	5 cut(s)	96, 573, 666, 798, 984
Bme1390I	CCNGG	2 cut(s)	49, 787
Bme18I	GGWCC	4 cut(s)	51, 116, 417, 579
BmgT120I	GGNCC	5 cut(s)	51, 116, 263, 417, 579
BmiI	GGNNCC	4 cut(s)	123, 280, 370, 483
BmrFI	CCNGG	2 cut(s)	49, 787
BmsI	GCATC	3 cut(s)	235, 568, 680
BpiI	GAAGAC	1 cut(s)	728
BsaHI	GRCGYC	2 cut(s)	550, 855
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	6 cut(s)	6, 354, 477, 601, 771, 850
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 121, 151, 466, 496
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 506, 700, 792, 1053
Bse3DI	GCAATG	3 cut(s)	347, 380, 476
BseBI	CCWGG	2 cut(s)	49, 787
BseDI	CCNNGG	6 cut(s)	6, 354, 477, 601, 771, 850
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	5 cut(s)	12, 506, 700, 792, 1053
BseMI	GCAATG	3 cut(s)	347, 380, 476
BseMII	CTCAG	3 cut(s)	171, 250, 1062
BseRI	GAGGAG	1 cut(s)	721
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	5 cut(s)	106, 583, 651, 808, 969
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	925
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	188, 609
BslI	CCNNNNNNNGG	5 cut(s)	12, 506, 700, 792, 1053
BsmAI	GTCTC	2 cut(s)	844, 862
BsmBI	CGTCTC	1 cut(s)	862
BsmFI	GGGAC	2 cut(s)	188, 609
BsmI	GAATGC	3 cut(s)	25, 893, 1013
BsnI	GGCC	1 cut(s)	264
Bso31I	GGTCTC	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	1 cut(s)	399
Bsp19I	CCATGG	2 cut(s)	771, 850
BspACI	CCGC	4 cut(s)	420, 1011, 1018, 1077
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	170, 251, 1061
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	4 cut(s)	123, 280, 370, 483
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	844
BsrDI	GCAATG	3 cut(s)	347, 380, 476
BssECI	CCNNGG	6 cut(s)	6, 354, 477, 601, 771, 850
BssMI	GATC	1 cut(s)	399
BssNI	GRCGYC	2 cut(s)	550, 855
BssT1I	CCWWGG	6 cut(s)	6, 354, 477, 601, 771, 850
Bst2UI	CCWGG	2 cut(s)	49, 787
Bst4CI	ACNGT	3 cut(s)	103, 126, 999
Bst6I	CTCTTC	2 cut(s)	256, 407
BstACI	GRCGYC	2 cut(s)	550, 855
BstC8I	GCNNGC	3 cut(s)	224, 1022, 1026
BstDEI	CTNAG	5 cut(s)	157, 259, 657, 898, 1048
BstDSI	CCRYGG	2 cut(s)	771, 850
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	2 cut(s)	844, 862
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 94, 556, 571, 1034
BstNI	CCWGG	2 cut(s)	49, 787
BstNSI	RCATGY	1 cut(s)	1032
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	47, 785
BstSLI	GKGCMC	1 cut(s)	925
BstV1I	GCAGC	5 cut(s)	106, 583, 651, 808, 969
BstV2I	GAAGAC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	2 cut(s)	771, 850
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	5 cut(s)	108, 165, 554, 944, 1056
Cac8I	GCNNGC	3 cut(s)	224, 1022, 1026
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	5 cut(s)	51, 116, 263, 417, 579
CseI	GACGC	3 cut(s)	185, 539, 844
CsiI	ACCWGGT	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	369, 510, 606
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	6 cut(s)	293, 304, 741, 772, 851, 1029
CviQI	GTAC	3 cut(s)	369, 510, 606
DdeI	CTNAG	5 cut(s)	157, 259, 657, 898, 1048
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	256, 407
EarI	CTCTTC	2 cut(s)	256, 407
EciI	GGCGGA	1 cut(s)	1007
Eco130I	CCWWGG	6 cut(s)	6, 354, 477, 601, 771, 850
Eco31I	GGTCTC	1 cut(s)	844
Eco32I	GATATC	1 cut(s)	1044
Eco47I	GGWCC	4 cut(s)	51, 116, 417, 579
Eco91I	GGTNACC	1 cut(s)	628
EcoO65I	GGTNACC	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	47, 785
EcoRV	GATATC	1 cut(s)	1044
EcoT14I	CCWWGG	6 cut(s)	6, 354, 477, 601, 771, 850
EcoT22I	ATGCAT	1 cut(s)	895
ErhI	CCWWGG	6 cut(s)	6, 354, 477, 601, 771, 850
Esp3I	CGTCTC	1 cut(s)	862
FaeI	CATG	6 cut(s)	296, 307, 744, 775, 854, 1032
FaqI	GGGAC	2 cut(s)	188, 609
FatI	CATG	6 cut(s)	292, 303, 740, 771, 850, 1028
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	5 cut(s)	95, 572, 665, 797, 983
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	95, 572, 665, 797, 983
FspBI	CTAG	6 cut(s)	22, 142, 355, 478, 602, 1034
GluI	GCNGC	5 cut(s)	95, 572, 665, 797, 983
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	3 cut(s)	185, 539, 844
Hin1I	GRCGYC	2 cut(s)	550, 855
Hin1II	CATG	6 cut(s)	296, 307, 744, 775, 854, 1032
HinfI	GANTC	3 cut(s)	163, 597, 733
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	4 cut(s)	45, 129, 554, 923
Hpy188III	TCNNGA	2 cut(s)	304, 812
Hpy8I	GTNNAC	4 cut(s)	45, 129, 554, 923
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	421, 517, 723
HpyCH4III	ACNGT	3 cut(s)	103, 126, 999
HpyCH4V	TGCA	8 cut(s)	75, 385, 559, 565, 571, 640, 893, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 94, 556, 571, 1034
HpyF3I	CTNAG	5 cut(s)	157, 259, 657, 898, 1048
Hsp92I	GRCGYC	2 cut(s)	550, 855
Hsp92II	CATG	6 cut(s)	296, 307, 744, 775, 854, 1032
KpnI	GGTACC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	6 cut(s)	278, 394, 487, 708, 972, 979
Lsp1109I	GCAGC	5 cut(s)	106, 583, 651, 808, 969
LweI	GCATC	3 cut(s)	235, 568, 680
MabI	ACCWGGT	1 cut(s)	47
MaeI	CTAG	6 cut(s)	22, 142, 355, 478, 602, 1034
MaeIII	GTNAC	3 cut(s)	233, 628, 902
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	5 cut(s)	126, 243, 424, 728, 892
MfeI	CAATTG	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	925
MluCI	AATT	5 cut(s)	317, 527, 536, 866, 911
MlyI	GAGTC	2 cut(s)	591, 742
MmeI	TCCRAC	1 cut(s)	518
Mph1103I	ATGCAT	1 cut(s)	895
MseI	TTAA	2 cut(s)	61, 887
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	49, 787
MunI	CAATTG	1 cut(s)	536
Mva1269I	GAATGC	3 cut(s)	25, 893, 1013
MvaI	CCWGG	2 cut(s)	49, 787
MwoI	GCNNNNNNNGC	5 cut(s)	22, 94, 556, 571, 1034
NcoI	CCATGG	2 cut(s)	771, 850
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	6 cut(s)	296, 307, 744, 775, 854, 1032
NlaIV	GGNNCC	4 cut(s)	123, 280, 370, 483
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	1032
PagI	TCATGA	1 cut(s)	303
PctI	GAATGC	3 cut(s)	25, 893, 1013
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	2 cut(s)	12, 700
PfoI	TCCNGGA	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	96, 573, 666, 798, 984
PleI	GAGTC	2 cut(s)	591, 741
PpsI	GAGTC	2 cut(s)	591, 741
Psp6I	CCWGG	2 cut(s)	47, 785
PspEI	GGTNACC	1 cut(s)	628
PspGI	CCWGG	2 cut(s)	47, 785
PspN4I	GGNNCC	4 cut(s)	123, 280, 370, 483
PspPI	GGNCC	5 cut(s)	51, 116, 263, 417, 579
RsaI	GTAC	3 cut(s)	370, 511, 607
RsaNI	GTAC	3 cut(s)	369, 510, 606
SaqAI	TTAA	2 cut(s)	61, 887
SatI	GCNGC	5 cut(s)	95, 572, 665, 797, 983
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	5 cut(s)	51, 116, 263, 417, 579
SchI	GAGTC	2 cut(s)	591, 742
ScrFI	CCNGG	2 cut(s)	49, 787
SduI	GDGCHC	1 cut(s)	925
SexAI	ACCWGGT	1 cut(s)	47
SfaNI	GCATC	3 cut(s)	235, 568, 680
SinI	GGWCC	4 cut(s)	51, 116, 417, 579
Sse9I	AATT	5 cut(s)	317, 527, 536, 866, 911
SsiI	CCGC	4 cut(s)	420, 1011, 1018, 1077
SspMI	CTAG	6 cut(s)	22, 142, 355, 478, 602, 1034
StyD4I	CCNGG	2 cut(s)	47, 785
StyI	CCWWGG	6 cut(s)	6, 354, 477, 601, 771, 850
TaaI	ACNGT	3 cut(s)	103, 126, 999
TaqI	TCGA	1 cut(s)	515
TasI	AATT	5 cut(s)	317, 527, 536, 866, 911
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	61, 887
Tru9I	TTAA	2 cut(s)	61, 887
TscAI	CASTG	5 cut(s)	108, 165, 561, 944, 1056
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	5 cut(s)	94, 571, 664, 796, 982
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	7 cut(s)	320, 425, 487, 536, 757, 1003, 1053
TspRI	CASTG	5 cut(s)	108, 165, 561, 944, 1056
Van91I	CCANNNNNTGG	2 cut(s)	12, 700
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	4 cut(s)	51, 116, 417, 579
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmaJI	CCTAGG	3 cut(s)	354, 477, 601
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	6 cut(s)	22, 142, 355, 478, 602, 1034
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.