Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010711

Physical Location & Seq

Genomic Coordinates Forward (+)

26442169 .. 26442732

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCCCTCTTTGTAGAGCAGGGAGCTGCCATGAAAACTACTATTCCAAACTTCAGCATCCCACCAGCAAGCATGTCGAGCTTCGACATCATCAGCGTGGCCGTTTTCATTTTCATTTATCGACGGATTATAGACCCATTTGTAGGCAGAATAAAGAAATCAGATGCTAAAGGGCTTACTGAGCTTCAACGAATGGGCATTGGCCTTGTTATAGCAGTCATGGCAATGGTTTCAGCAGGAATTGTTGAGTGCTATAGACTCAAGTATGCCGATAAAGAATGCCCGCATTGTGACGGCTCAAGCTCCTTAAGCATCTTCTGGCAAATTCCTCAGTATGCATGTATAGGAGCTTCAGAAGTTTTCATGTATGTAGGTCAACTGGAGTTCTTCAATGCACAAACACCAGATGGACTAAAGAGCTTTGGAAGCGCCCTATGCATGACATCCATCTCGCTTGGTAACTACTTTAGCACCTTTCTCGTGAGCGTGGTCATGAAGTTCTCAACTGTGGATCGAACATGCCAGGATCGATCCCCGGAAACCTCAACAGGGGTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

188

Amino Acids

20.45

Weight (kDa)

6.55

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 170	1.2e-35	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32450
fragaria_vesca	FvH4_5g21490
malus_domestica	MD06G1029400.v1.1 MD16G1277800.v1.1
prunus_persica	Prupe.5G042300_v2.0.a1
pyrus_communis	pycom06g02370 pycom16g24760 pycom16g24770
rosa_chinensis	RchiOBHm_Chr7g0208891
rosa_laevigata	RLG00000003186
rosa_multiflora	Rmu_sc0000532.1_g000007 Rmu_sc0006433.1_g000001 Rmu_sc0016359.1_g000003 Rmu_sc0030959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250070
rosa_rugosa	Rorug07G0107200
rosa_samantha	Rh7AG242200 Rh7BG237000 Rh7DG248100
rosa_wichuraiana	Rw7G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	3 cut(s)	522, 528, 537
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	40, 339
AfiI	CCNNNNNNNGG	2 cut(s)	146, 552
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	191, 394
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	6 cut(s)	29, 84, 187, 306, 353, 423
AluI	AGCT	6 cut(s)	29, 84, 187, 306, 353, 423
AlwI	GGATC	3 cut(s)	522, 528, 537
AoxI	GGCC	2 cut(s)	102, 205
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	550
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BauI	CACGAG	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	404, 458
BceAI	ACGGC	2 cut(s)	89, 313
BcgI	CGANNNNNNTGC	4 cut(s)	60, 94, 463, 497
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	539
BfaI	CTAG	1 cut(s)	562
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	527, 539
BmrFI	CCNGG	2 cut(s)	527, 539
BmsI	GCATC	3 cut(s)	69, 157, 324
BpmI	CTGGAG	1 cut(s)	404
BpuEI	CTTGAG	2 cut(s)	248, 286
BpuMI	CCSGG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 552
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	2 cut(s)	60, 446
BseLI	CCNNNNNNNGG	2 cut(s)	146, 552
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	174, 347
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	104, 207
BshVI	ATCGAT	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	146, 552
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	104, 207
Bsp143I	GATC	3 cut(s)	514, 529, 533
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	104, 207
BspCNI	CTCAG	2 cut(s)	175, 346
BspDI	ATCGAT	1 cut(s)	532
BspHI	TCATGA	1 cut(s)	495
BspPI	GGATC	3 cut(s)	522, 528, 537
BspTI	CTTAAG	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	3 cut(s)	514, 529, 533
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	511
BstAFI	CTTAAG	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	73, 287
BstDEI	CTNAG	2 cut(s)	183, 333
BstEII	GGTNACC	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	60, 446
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	3 cut(s)	517, 532, 536
BstMBI	GATC	3 cut(s)	514, 529, 533
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 184, 224, 312, 429, 438
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	3 cut(s)	79, 345, 525
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	525, 537
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	104, 207
BsuTUI	ATCGAT	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	60, 446
Cac8I	GCNNGC	2 cut(s)	73, 287
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	532
CviAII	CATG	8 cut(s)	34, 76, 223, 342, 367, 442, 496, 522
DdeI	CTNAG	2 cut(s)	183, 333
DpnI	GATC	3 cut(s)	516, 531, 535
DpnII	GATC	3 cut(s)	514, 529, 533
EaeI	YGGCCR	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	40, 339
Eco91I	GGTNACC	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	525
EcoT22I	ATGCAT	2 cut(s)	343, 443
FaeI	CATG	8 cut(s)	37, 79, 226, 345, 370, 445, 499, 525
FatI	CATG	8 cut(s)	33, 75, 222, 341, 366, 441, 495, 521
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	47, 433
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	562
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	104, 207
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	8 cut(s)	37, 79, 226, 345, 370, 445, 499, 525
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	166, 358
Hpy188III	TCNNGA	2 cut(s)	484, 496
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	3 cut(s)	341, 398, 441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 184, 224, 312, 429, 438
HpyF3I	CTNAG	2 cut(s)	183, 333
Hsp92II	CATG	8 cut(s)	37, 79, 226, 345, 370, 445, 499, 525
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	514, 529, 533
LmnI	GCTCC	3 cut(s)	26, 311, 350
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	69, 157, 324
MaeI	CTAG	1 cut(s)	562
MaeIII	GTNAC	3 cut(s)	293, 461, 556
MalI	GATC	3 cut(s)	516, 531, 535
MboI	GATC	3 cut(s)	514, 529, 533
MboII	GAAGA	2 cut(s)	310, 382
MluCI	AATT	2 cut(s)	243, 327
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	20, 342, 556
Mph1103I	ATGCAT	2 cut(s)	343, 443
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	2 cut(s)	98, 227
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	527, 539
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	6 cut(s)	81, 184, 224, 312, 429, 438
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	3 cut(s)	514, 529, 533
NlaIII	CATG	8 cut(s)	37, 79, 226, 345, 370, 445, 499, 525
NmuCI	GTSAC	2 cut(s)	293, 556
NsiI	ATGCAT	2 cut(s)	343, 443
NspI	RCATGY	3 cut(s)	79, 345, 525
PagI	TCATGA	1 cut(s)	495
PctI	GAATGC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	525
PspEI	GGTNACC	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	525
RseI	CAYNNNNRTG	2 cut(s)	98, 227
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	514, 529, 533
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	527, 539
SfaNI	GCATC	3 cut(s)	69, 157, 324
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	98, 227
SmlI	CTYRAG	3 cut(s)	263, 301, 310
SmoI	CTYRAG	3 cut(s)	263, 301, 310
Sse9I	AATT	2 cut(s)	243, 327
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	525, 537
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	5 cut(s)	80, 87, 124, 517, 532
TasI	AATT	2 cut(s)	243, 327
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	293, 556
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	293, 556
TspDTI	ATGAA	5 cut(s)	50, 100, 106, 355, 512
TspGWI	ACGGA	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	3 cut(s)	79, 345, 525
XspI	CTAG	1 cut(s)	562
Zsp2I	ATGCAT	2 cut(s)	343, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.