Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0022542

Physical Location & Seq

Genomic Coordinates Forward (+)

3973553 .. 3974679

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAGCCAACATATGTTCCGTCAAGTATAATCCGGGATCTGGCAACTGCATTGCGGTTGGTTCAGCAGACCATCACATCCACTATTATGATTTAAGAAATCCGAGCGAACCACTCCATGTGTTCACTGGGCATGGGAAAGCTGTTTCTTATGTAAAGTTCTTGTCAAACTATGAGCTTGCCTCTGCATCCACTGATACCACGTTGCGGTTATGGAATGTGAAGGATAATATTCCAGTTCGTACTTTCAAAGGTCACACAAATAAGAACAACTCTGTAGGTTTTACAGTAAACAGCGAATACATTGCATGTGGCAGCGAAACAAATGAAGTGTTCGTGTATCATAAGGAAATCTCTAAACCGGTGACTTGGCATAAATTTGGGTTGCCTGATTTGGATGACGCTGATGATGATGCGGGGTCATACTTCATCAGTGCTGTATGTTGGAAGAGTGATAGCCCTACCATGCTAACTGCTAACAGTCAAGGAACCATTAAAGTGTTGGTTCTTGCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

6.42

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022542)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g03140
rosa_multiflora	Rmu_sc0001428.1_g000002 Rmu_sc0001930.1_g000003
rosa_samantha	Rh4AG041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	56, 208, 416, 512
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	41, 207
AgeI	ACCGGT	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	143, 178
AluI	AGCT	2 cut(s)	143, 178
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BcnI	CCSGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	316, 513
BlsI	GCNGC	2 cut(s)	317, 514
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	197, 403
BmuI	ACTGGG	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuMI	CCSGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 207
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	133, 236
Bse3DI	GCAATG	2 cut(s)	51, 303
BseGI	GGATG	3 cut(s)	78, 188, 403
BseLI	CCNNNNNNNGG	2 cut(s)	41, 207
BseMI	GCAATG	2 cut(s)	51, 303
BseNI	ACTGG	2 cut(s)	133, 236
BseXI	GCAGC	1 cut(s)	327
BshTI	ACCGGT	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	35, 362
BslI	CCNNNNNNNGG	2 cut(s)	41, 207
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	4 cut(s)	56, 208, 416, 512
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	51, 303
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	133, 236
BssAI	RCCGGY	1 cut(s)	361
BssMI	GATC	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	289, 482
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	78, 188, 403
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	78, 188, 403
BtsIMutI	CAGTG	3 cut(s)	126, 192, 439
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	361
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	361
CviAII	CATG	4 cut(s)	119, 134, 309, 466
CviJI	RGCY	4 cut(s)	8, 143, 178, 459
CviKI_1	RGCY	4 cut(s)	8, 143, 178, 459
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	122, 137, 312, 469
FatI	CATG	4 cut(s)	118, 133, 308, 465
FauI	CCCGC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	316, 513
FokI	GGATG	3 cut(s)	65, 175, 410
Fsp4HI	GCNGC	2 cut(s)	316, 513
GluI	GCNGC	2 cut(s)	316, 513
HapII	CCGG	2 cut(s)	35, 362
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	4 cut(s)	122, 137, 312, 469
HpaII	CCGG	2 cut(s)	35, 362
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	126, 292
Hpy188I	TCNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	126, 292
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	289, 482
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	51, 188, 308
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	122, 137, 312, 469
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	27, 48, 114, 249, 375, 402
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	197, 403
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	254, 364
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	95, 495
MslI	CAYNNNNRTG	2 cut(s)	87, 497
MspI	CCGG	2 cut(s)	35, 362
MspR9I	CCNGG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	14
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	4 cut(s)	122, 137, 312, 469
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	254, 364
NspI	RCATGY	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	317, 514
PspN4I	GGNNCC	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	87, 497
SaqAI	TTAA	2 cut(s)	95, 495
SatI	GCNGC	2 cut(s)	316, 513
Sau3AI	GATC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	5 cut(s)	145, 180, 206, 256, 283
SfaNI	GCATC	2 cut(s)	197, 403
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	87, 497
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	4 cut(s)	56, 208, 416, 512
SspI	AATATT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	289, 482
TaiI	ACGT	1 cut(s)	206
TasI	AATT	1 cut(s)	377
TauI	GCSGC	1 cut(s)	515
Tru1I	TTAA	2 cut(s)	95, 495
Tru9I	TTAA	2 cut(s)	95, 495
TscAI	CASTG	3 cut(s)	133, 199, 439
TseFI	GTSAC	2 cut(s)	254, 364
TseI	GCWGC	1 cut(s)	315
Tsp45I	GTSAC	2 cut(s)	254, 364
TspDTI	ATGAA	3 cut(s)	17, 342, 418
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	133, 199, 439
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.