E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom06g03140 |
| rosa_multiflora | Rmu_sc0001428.1_g000002 Rmu_sc0001930.1_g000003 |
| rosa_samantha | Rh4AG041400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 295 |
| AluBI | AGCT | 2 cut(s) | 227, 278 |
| AluI | AGCT | 2 cut(s) | 227, 278 |
| Alw21I | GWGCWC | 1 cut(s) | 305 |
| ApeKI | GCWGC | 2 cut(s) | 81, 278 |
| ApoI | RAATTY | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 1 cut(s) | 144 |
| BbsI | GAAGAC | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 305 |
| BbvI | GCAGC | 2 cut(s) | 93, 265 |
| BccI | CCATC | 1 cut(s) | 224 |
| BceAI | ACGGC | 1 cut(s) | 266 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 161, 195 |
| BfaI | CTAG | 1 cut(s) | 224 |
| BfmI | CTRYAG | 1 cut(s) | 273 |
| BisI | GCNGC | 2 cut(s) | 82, 279 |
| BlsI | GCNGC | 2 cut(s) | 83, 280 |
| BmcAI | AGTACT | 1 cut(s) | 295 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BpiI | GAAGAC | 1 cut(s) | 171 |
| BseMII | CTCAG | 2 cut(s) | 255, 256 |
| BseXI | GCAGC | 2 cut(s) | 93, 265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 305 |
| BsmI | GAATGC | 1 cut(s) | 274 |
| Bsp1286I | GDGCHC | 1 cut(s) | 305 |
| BspCNI | CTCAG | 2 cut(s) | 255, 256 |
| Bst4CI | ACNGT | 3 cut(s) | 9, 55, 62 |
| BstDEI | CTNAG | 2 cut(s) | 242, 264 |
| BstEII | GGTNACC | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| BstNSI | RCATGY | 1 cut(s) | 78 |
| BstPI | GGTNACC | 1 cut(s) | 150 |
| BstSFI | CTRYAG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 2 cut(s) | 93, 265 |
| BstV2I | GAAGAC | 1 cut(s) | 171 |
| BtgZI | GCGATG | 1 cut(s) | 55 |
| BtsI | GCAGTG | 1 cut(s) | 258 |
| BtsIMutI | CAGTG | 4 cut(s) | 67, 205, 250, 258 |
| Csp6I | GTAC | 1 cut(s) | 294 |
| CviAII | CATG | 1 cut(s) | 75 |
| CviJI | RGCY | 3 cut(s) | 227, 237, 278 |
| CviKI_1 | RGCY | 3 cut(s) | 227, 237, 278 |
| CviQI | GTAC | 1 cut(s) | 294 |
| DdeI | CTNAG | 2 cut(s) | 242, 264 |
| Eco91I | GGTNACC | 1 cut(s) | 150 |
| EcoO65I | GGTNACC | 1 cut(s) | 150 |
| FaeI | CATG | 1 cut(s) | 78 |
| FaiI | YATR | 5 cut(s) | 19, 76, 111, 161, 275 |
| FatI | CATG | 1 cut(s) | 74 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 279 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 279 |
| FspBI | CTAG | 1 cut(s) | 224 |
| GluI | GCNGC | 2 cut(s) | 82, 279 |
| Hin1II | CATG | 1 cut(s) | 78 |
| HinfI | GANTC | 1 cut(s) | 260 |
| HphI | GGTGA | 1 cut(s) | 144 |
| Hpy166II | GTNNAC | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy8I | GTNNAC | 1 cut(s) | 58 |
| HpyAV | CCTTC | 1 cut(s) | 248 |
| HpyCH4III | ACNGT | 3 cut(s) | 9, 55, 62 |
| HpyCH4V | TGCA | 2 cut(s) | 182, 213 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 2 cut(s) | 242, 264 |
| Hsp92II | CATG | 1 cut(s) | 78 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| LpnPI | CCDG | 4 cut(s) | 141, 168, 168, 199 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 265 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 1 cut(s) | 224 |
| MaeIII | GTNAC | 3 cut(s) | 20, 130, 150 |
| MboII | GAAGA | 3 cut(s) | 46, 176, 185 |
| MhlI | GDGCHC | 1 cut(s) | 305 |
| MluCI | AATT | 1 cut(s) | 117 |
| MnlI | CCTC | 1 cut(s) | 241 |
| MroXI | GAANNNNTTC | 1 cut(s) | 38 |
| MslI | CAYNNNNRTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 1 cut(s) | 274 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NlaIII | CATG | 1 cut(s) | 78 |
| NmuCI | GTSAC | 3 cut(s) | 20, 130, 150 |
| NspI | RCATGY | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 38 |
| PfeI | GAWTC | 1 cut(s) | 260 |
| PkrI | GCNGC | 2 cut(s) | 83, 280 |
| PspEI | GGTNACC | 1 cut(s) | 150 |
| RsaI | GTAC | 1 cut(s) | 295 |
| RsaNI | GTAC | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 27 |
| SatI | GCNGC | 2 cut(s) | 82, 279 |
| ScaI | AGTACT | 1 cut(s) | 295 |
| SduI | GDGCHC | 1 cut(s) | 305 |
| SetI | ASST | 5 cut(s) | 49, 130, 157, 229, 280 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| SfcI | CTRYAG | 1 cut(s) | 273 |
| SgeI | CNNG | 9 cut(s) | 87, 115, 140, 147, 167, 195, 222, 226, 236 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 27 |
| Sse9I | AATT | 1 cut(s) | 117 |
| SspMI | CTAG | 1 cut(s) | 224 |
| TaaI | ACNGT | 3 cut(s) | 9, 55, 62 |
| TasI | AATT | 1 cut(s) | 117 |
| TatI | WGTACW | 1 cut(s) | 293 |
| TfiI | GAWTC | 1 cut(s) | 260 |
| TscAI | CASTG | 4 cut(s) | 67, 205, 250, 258 |
| TseFI | GTSAC | 3 cut(s) | 20, 130, 150 |
| TseI | GCWGC | 2 cut(s) | 81, 278 |
| Tsp45I | GTSAC | 3 cut(s) | 20, 130, 150 |
| TspDTI | ATGAA | 2 cut(s) | 108, 184 |
| TspRI | CASTG | 4 cut(s) | 67, 205, 250, 258 |
| XapI | RAATTY | 1 cut(s) | 117 |
| XceI | RCATGY | 1 cut(s) | 78 |
| XmnI | GAANNNNTTC | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 224 |
| ZrmI | AGTACT | 1 cut(s) | 295 |