Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001428.1

Orthogroup ID

OG0022542

Physical Location & Seq

Genomic Coordinates Forward (+)

13527 .. 17656

Gene Structure 4130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001428.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggaactgttattgctatgtcacacaaatgagaagaacttcgtaggtcttacagtaaacagtgaatacatcgcatgtggcagcgaaacaaatgaagtgttcgtgtatcataaggaaatttctaaacctgtgacttggcacagatttgggtcacctgatatggaagacaccgaagatgatgcagggtcttacttcatcagtgctgtatcttgtaggaaatgtctagctgatggaagccttgttgaggcagtggtggattctgagaatgctgaagatgctgtaaatgcgaggcagtctccgctagcggaacttctccctttaaatcttataagtgaggcagtctccactagcgaaacgccgctagcggaacttctcccttttcatcttgaaagtgaggcagtcaccactaagcgaaaccctgctagtggaacttctccctcttcatcttgcaagcgaggcagtctccgccagcgaaactccgctagcggaattccttttcatcttgcaagtgaggcagtctccgctaggcacaacgctgctattagactaagtccctccgggacatgtcaacagtctacgacggccctgatcaggcacgttgaaccccgccacttggagattgggctcactacccaacaccctctactcagtgcaactcccatcaacaaacaatacaccgaccaaacaaaggtctatcttagccagggagtgggggactccatggggggggggggcctcgcaggggcccaccgaaagggtataaagcgtttgcttagtaagtccatgcggagtgaccaacggaaacacagccaagcaggctaccgcctgagccttggctcacccctagatcaccgccgacgcgccgccacgggccgtatcaagatggcatcagaagctccagaagttgggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

304

Amino Acids

32.82

Weight (kDa)

7.2

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022542)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g03140
rosa_multiflora	Rmu_sc0001428.1_g000002 Rmu_sc0001930.1_g000003
rosa_samantha	Rh4AG041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccB7I	CCANNNNNTGG	2 cut(s)	709, 905
AccI	GTMKAC	1 cut(s)	575
AccII	CGCG	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	117, 489
AcuI	CTGAAG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	2 cut(s)	389, 602
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	2 cut(s)	227, 896
AluI	AGCT	2 cut(s)	227, 896
Alw26I	GTCTC	4 cut(s)	300, 346, 467, 523
AoxI	GGCC	4 cut(s)	582, 733, 744, 871
ApaI	GGGCCC	1 cut(s)	748
ApeKI	GCWGC	2 cut(s)	81, 536
ApoI	RAATTY	2 cut(s)	117, 489
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	5 cut(s)	583, 733, 744, 745, 871
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	4 cut(s)	144, 394, 831, 842
AsuNHI	GCTAGC	3 cut(s)	301, 361, 482
BaeGI	GKGCMC	1 cut(s)	748
BanII	GRGCYC	2 cut(s)	627, 748
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	93, 523
BccI	CCATC	3 cut(s)	224, 668, 877
BceAI	ACGGC	2 cut(s)	597, 858
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	1 cut(s)	704
BclI	TGATCA	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	4 cut(s)	300, 346, 467, 523
BfaI	CTAG	8 cut(s)	224, 302, 348, 362, 423, 483, 525, 845
BglI	GCCNNNNNGGC	1 cut(s)	816
BisI	GCNGC	4 cut(s)	82, 359, 537, 864
BlsI	GCNGC	4 cut(s)	83, 360, 538, 865
Bme1390I	CCNGG	2 cut(s)	559, 704
BmgT120I	GGNCC	5 cut(s)	583, 733, 744, 745, 871
BmiI	GGNNCC	3 cut(s)	734, 745, 746
BmrFI	CCNGG	2 cut(s)	559, 704
BmsI	GCATC	3 cut(s)	169, 265, 896
BmtI	GCTAGC	3 cut(s)	305, 365, 486
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	8 cut(s)	280, 312, 326, 358, 447, 479, 503, 535
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	4 cut(s)	703, 720, 832, 867
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	4 cut(s)	703, 720, 832, 867
BseMII	CTCAG	3 cut(s)	252, 661, 818
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	93, 523
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	4 cut(s)	584, 735, 746, 873
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	3 cut(s)	537, 574, 728
BsmAI	GTCTC	4 cut(s)	300, 346, 467, 523
BsmFI	GGGAC	3 cut(s)	537, 574, 728
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	584, 735, 746, 873
Bsp120I	GGGCCC	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	627, 748
Bsp143I	GATC	2 cut(s)	588, 847
Bsp19I	CCATGG	1 cut(s)	720
BspANI	GGCC	4 cut(s)	584, 735, 746, 873
BspCNI	CTCAG	3 cut(s)	253, 660, 819
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	3 cut(s)	734, 745, 746
BspOI	GCTAGC	3 cut(s)	305, 365, 486
BssECI	CCNNGG	4 cut(s)	703, 720, 832, 867
BssMI	GATC	2 cut(s)	588, 847
BssT1I	CCWWGG	2 cut(s)	720, 832
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	4 cut(s)	9, 55, 62, 573
Bst6I	CTCTTC	1 cut(s)	445
BstC8I	GCNNGC	6 cut(s)	303, 363, 452, 470, 484, 817
BstDEI	CTNAG	7 cut(s)	261, 408, 548, 647, 698, 773, 827
BstDSI	CCRYGG	2 cut(s)	720, 867
BstEII	GGTNACC	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	863
BstKTI	GATC	2 cut(s)	591, 850
BstMAI	GTCTC	4 cut(s)	300, 346, 467, 523
BstMBI	GATC	2 cut(s)	588, 847
BstMWI	GCNNNNNNNGC	9 cut(s)	275, 284, 298, 456, 465, 512, 521, 816, 893
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	2 cut(s)	78, 567
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	557, 702
BstSLI	GKGCMC	1 cut(s)	748
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	2 cut(s)	93, 523
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	4 cut(s)	584, 735, 746, 873
BtgI	CCRYGG	2 cut(s)	720, 867
BtgZI	GCGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	67, 205, 255, 655
Cac8I	GCNNGC	6 cut(s)	303, 363, 452, 470, 484, 817
CfoI	GCGC	1 cut(s)	863
Cfr13I	GGNCC	5 cut(s)	583, 733, 744, 745, 871
CseI	GACGC	1 cut(s)	867
CviAII	CATG	4 cut(s)	75, 564, 721, 784
DdeI	CTNAG	7 cut(s)	261, 408, 548, 647, 698, 773, 827
DpnI	GATC	2 cut(s)	590, 849
DpnII	GATC	2 cut(s)	588, 847
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	720, 832
Eco24I	GRGCYC	2 cut(s)	627, 748
Eco57I	CTGAAG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	733, 744
EcoO65I	GGTNACC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	2 cut(s)	720, 832
EcoT38I	GRGCYC	2 cut(s)	627, 748
ErhI	CCWWGG	2 cut(s)	720, 832
FaeI	CATG	4 cut(s)	78, 567, 724, 787
FaiI	YATR	9 cut(s)	19, 76, 111, 161, 329, 565, 722, 761, 785
FaqI	GGGAC	3 cut(s)	537, 574, 728
FatI	CATG	4 cut(s)	74, 563, 720, 783
FauI	CCCGC	1 cut(s)	614
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	4 cut(s)	82, 359, 537, 864
FriOI	GRGCYC	2 cut(s)	627, 748
Fsp4HI	GCNGC	4 cut(s)	82, 359, 537, 864
FspBI	CTAG	8 cut(s)	224, 302, 348, 362, 423, 483, 525, 845
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	4 cut(s)	82, 359, 537, 864
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	4 cut(s)	584, 735, 746, 873
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	867
HhaI	GCGC	1 cut(s)	863
Hin1II	CATG	4 cut(s)	78, 567, 724, 787
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HincII	GTYRAC	1 cut(s)	569
HindII	GTYRAC	1 cut(s)	569
HinfI	GANTC	2 cut(s)	257, 716
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	4 cut(s)	144, 394, 831, 842
Hpy166II	GTNNAC	3 cut(s)	58, 569, 576
Hpy188I	TCNGA	2 cut(s)	262, 892
Hpy188III	TCNNGA	3 cut(s)	386, 880, 899
Hpy8I	GTNNAC	3 cut(s)	58, 569, 576
Hpy99I	CGWCG	2 cut(s)	583, 861
HpyCH4III	ACNGT	4 cut(s)	9, 55, 62, 573
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	4 cut(s)	182, 450, 506, 653
HpyF10VI	GCNNNNNNNGC	9 cut(s)	275, 284, 298, 456, 465, 512, 521, 816, 893
HpyF3I	CTNAG	7 cut(s)	261, 408, 548, 647, 698, 773, 827
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	78, 567, 724, 787
HspAI	GCGC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	588, 847
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	2 cut(s)	93, 523
LweI	GCATC	3 cut(s)	169, 265, 896
MaeI	CTAG	8 cut(s)	224, 302, 348, 362, 423, 483, 525, 845
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	5 cut(s)	20, 130, 150, 400, 791
MalI	GATC	2 cut(s)	590, 849
MboI	GATC	2 cut(s)	588, 847
MboII	GAAGA	5 cut(s)	46, 176, 185, 284, 432
MhlI	GDGCHC	2 cut(s)	627, 748
MluCI	AATT	2 cut(s)	117, 489
MlyI	GAGTC	1 cut(s)	710
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	559, 704
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	704
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	9 cut(s)	275, 284, 298, 456, 465, 512, 521, 816, 893
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	2 cut(s)	588, 847
NheI	GCTAGC	3 cut(s)	301, 361, 482
NlaIII	CATG	4 cut(s)	78, 567, 724, 787
NlaIV	GGNNCC	3 cut(s)	734, 745, 746
NmuCI	GTSAC	5 cut(s)	20, 130, 150, 400, 791
NspI	RCATGY	2 cut(s)	78, 567
PciI	ACATGT	1 cut(s)	563
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	549
PflMI	CCANNNNNTGG	2 cut(s)	709, 905
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	83, 360, 538, 865
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
PscI	ACATGT	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	702
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	3 cut(s)	734, 745, 746
PspOMI	GGGCCC	1 cut(s)	744
PspPI	GGNCC	5 cut(s)	583, 733, 744, 745, 871
PsyI	GACNNNGTC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	4 cut(s)	82, 359, 537, 864
Sau3AI	GATC	2 cut(s)	588, 847
Sau96I	GGNCC	5 cut(s)	583, 733, 744, 745, 871
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	559, 704
SduI	GDGCHC	2 cut(s)	627, 748
SetI	ASST	7 cut(s)	49, 130, 157, 229, 600, 693, 898
SfaNI	GCATC	3 cut(s)	169, 265, 896
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	117, 489
SspMI	CTAG	8 cut(s)	224, 302, 348, 362, 423, 483, 525, 845
StyD4I	CCNGG	2 cut(s)	557, 702
StyI	CCWWGG	2 cut(s)	720, 832
TaaI	ACNGT	4 cut(s)	9, 55, 62, 573
TaiI	ACGT	1 cut(s)	600
TasI	AATT	2 cut(s)	117, 489
TauI	GCSGC	2 cut(s)	361, 866
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	4 cut(s)	67, 205, 255, 655
TseFI	GTSAC	5 cut(s)	20, 130, 150, 400, 791
TseI	GCWGC	2 cut(s)	81, 536
Tsp45I	GTSAC	5 cut(s)	20, 130, 150, 400, 791
TspDTI	ATGAA	5 cut(s)	108, 184, 371, 432, 488
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	4 cut(s)	67, 205, 255, 655
Tth111I	GACNNNGTC	1 cut(s)	549
Van91I	CCANNNNNTGG	2 cut(s)	709, 905
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	117, 489
XceI	RCATGY	2 cut(s)	78, 567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	8 cut(s)	224, 302, 348, 362, 423, 483, 525, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.