Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0021886

Physical Location & Seq

Genomic Coordinates Reverse (-)

17701674 .. 17703672

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGACCGGTCGATACGGATCGCATATGTGGGACAATATTTGCAACAAAGAAGGGCAGAGCAGGAAGGGAAGGCAAGGAAAAGTAGTGGATTCTCAAGAGGGGCTTCAATGTACATAAGAATTACAAGATGTCATCAACATGAAAGATGGCTAGCCAGGAGTGGAAATGTTGCCGGAAATAAGGATCTTTATCTTGGGACATTCAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

71

Amino Acids

8.12

Weight (kDa)

10.9

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
malus_domestica	MD10G1135000.v1.1 MD14G1046900.v1.1
pyrus_communis	pycom06g12560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	26, 192
AfaI	GTAC	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	108
AhdI	GACNNNNNGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	155
AlwI	GGATC	2 cut(s)	26, 192
AlwNI	CAGNNNCTG	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	4
AsuNHI	GCTAGC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	79
BsaBI	GATNNNNATC	2 cut(s)	17, 189
BsaWI	WCCGGW	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	6
Bse8I	GATNNNNATC	2 cut(s)	17, 189
BseBI	CCWGG	1 cut(s)	157
BseJI	GATNNNNATC	2 cut(s)	17, 189
Bsh1285I	CGRYCG	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	7, 174
BslFI	GGGAC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	18, 184
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	26, 192
BsrFI	RCCGGY	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	6
BssMI	GATC	2 cut(s)	18, 184
Bst2UI	CCWGG	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	21, 187
BstMBI	GATC	2 cut(s)	18, 184
BstMCI	CGRYCG	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	112
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	104, 151, 155
CviKI_1	RGCY	3 cut(s)	104, 151, 155
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	2 cut(s)	20, 186
DpnII	GATC	2 cut(s)	18, 184
DriI	GACNNNNNGTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	143
FaiI	YATR	4 cut(s)	25, 27, 116, 141
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	25
FspBI	CTAG	1 cut(s)	152
HapII	CCGG	2 cut(s)	7, 174
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	7, 174
Hpy188III	TCNNGA	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	45, 59, 64
HpyCH4V	TGCA	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	18, 184
LpnPI	CCDG	5 cut(s)	20, 47, 142, 169, 187
MaeI	CTAG	1 cut(s)	152
MalI	GATC	2 cut(s)	20, 186
MboI	GATC	2 cut(s)	18, 184
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	7, 174
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	18, 184
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	18, 184
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	120
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.