pycom06g14340

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021266
Physical Location & Seq
Forward (+)
19113940 .. 19114221
282 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGCCCTTCTTCAACCATGAGGTGGTGAAGAAGGCACTGGTCATCGCCATGGAAAAGAAGAACGACAGGATGCTAGACCTGCTTCAGGAGTGCTTCAGCGAAGGACTGATCACAATCAACCAGATGACTAAAGGCTTCACCCGAGTCAAGGACGGGCTAGATGATCTGGCTCTTGACATTCCAAACGCGAGGGAGAAGTTCAGCTTCTACGTGGATCAGGCGCAGGAGAAGGGGTGGCTCCTCCCTGCCTTCGGATCACCTGCTGCGGATGGCTCGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

5.25

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 1 - 80 2e-20 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021266)

Species Orthologous Gene IDs
pyrus_communis pycom06g14340
rosa_chinensis RchiOBHm_Chr7g0191521
rosa_multiflora Rmu_sc0003634.1_g000004
rosa_samantha Rh7CG124000 Rh7CG124300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 2 cut(s) 87, 268
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 266
AclWI GGATC 2 cut(s) 222, 262
AcuI CTGAAG 2 cut(s) 68, 79
AfiI CCNNNNNNNGG 4 cut(s) 22, 85, 148, 251
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
AlwI GGATC 2 cut(s) 222, 262
Ama87I CYCGRG 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 37, 130, 249
AvaI CYCGRG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 263
BclI TGATCA 1 cut(s) 108
BfaI CTAG 2 cut(s) 74, 158
BfuAI ACCTGC 2 cut(s) 87, 268
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 85, 148, 251
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 75, 274
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 4 cut(s) 22, 85, 148, 251
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 141
BslI CCNNNNNNNGG 4 cut(s) 22, 85, 148, 251
BsoBI CYCGRG 1 cut(s) 141
Bsp143I GATC 4 cut(s) 108, 163, 214, 254
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 266
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 239
BspMI ACCTGC 2 cut(s) 87, 268
BspPI GGATC 2 cut(s) 222, 262
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 4 cut(s) 108, 163, 214, 254
BssT1I CCWWGG 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 75, 274
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 4 cut(s) 111, 166, 217, 257
BstMBI GATC 4 cut(s) 108, 163, 214, 254
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 75, 274
BtsIMutI CAGTG 1 cut(s) 35
BveI ACCTGC 2 cut(s) 87, 268
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 223
CviAII CATG 2 cut(s) 17, 49
CviJI RGCY 6 cut(s) 135, 157, 170, 204, 238, 273
CviKI_1 RGCY 6 cut(s) 135, 157, 170, 204, 238, 273
DpnI GATC 4 cut(s) 110, 165, 216, 256
DpnII GATC 4 cut(s) 108, 163, 214, 254
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 68, 79
Eco88I CYCGRG 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 20, 52
FaiI YATR 2 cut(s) 18, 50
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 16, 48
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 74, 158
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 223
Hin1II CATG 2 cut(s) 20, 52
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 144
HphI GGTGA 3 cut(s) 37, 130, 249
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 86, 173
HpyAV CCTTC 5 cut(s) 16, 25, 95, 223, 259
HpyCH4IV ACGT 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 20, 52
HspAI GCGC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 163, 214, 254
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 74, 158
MaeII ACGT 1 cut(s) 210
MalI GATC 4 cut(s) 110, 165, 216, 256
MboI GATC 4 cut(s) 108, 163, 214, 254
MboII GAAGA 2 cut(s) 40, 70
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 3 cut(s) 13, 183, 251
MslI CAYNNNNRTG 1 cut(s) 47
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 79
NcoI CCATGG 1 cut(s) 48
NdeII GATC 4 cut(s) 108, 163, 214, 254
NlaIII CATG 2 cut(s) 20, 52
NlaIV GGNNCC 1 cut(s) 239
PaqCI CACCTGC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 4 cut(s) 108, 163, 214, 254
SchI GAGTC 1 cut(s) 153
SetI ASST 5 cut(s) 24, 81, 206, 213, 262
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 74, 158
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 213
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 263
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 83
XspI CTAG 2 cut(s) 74, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.