Rh7CG124000

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0021266
Physical Location & Seq
Reverse (-)
9613819 .. 9614250
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG124000.1

Sequence Viewer

Length: 432 bp
ATGCTGGTGAGATCGAGGCTCCTGAGATGTTGGGGAGGTGGGACTGGCAGGATTGTGGAGGATGCAAAGGACAAGATCACAAAGCTCTTAGAGGAGTATGAAAGTGGGGGTGTCGTGGCTGAAGCCTGCCAGTGCATTCGTGATATCGGAATGCCTTTCTTTAACCATGAGGTGGTGAAGAAGGCGCTGGTTATGGCAATGGAGAAGAAGAATGACAGTATGCTGGATCTGCTTCAGGAGTGCTTCAGAGAAGGACTGATCACAATCAAGCAGCTGACCAAAGGCTTCACCCGGATCAAGGAAGGGCTAGATGACTTGGCTCTCGACATTCCAAATGCAAGGGAGAAGTTCAGTTTCTACGTGGAGCACGCACAGCAGAAGGGTTGGCTCCTGCCTACCTTTGGTTCATCTGCCGCGGATGGTTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

6.31

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 23 - 130 1.7e-33 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021266)

Species Orthologous Gene IDs
pyrus_communis pycom06g14340
rosa_chinensis RchiOBHm_Chr7g0191521
rosa_multiflora Rmu_sc0003634.1_g000004
rosa_samantha Rh7CG124000 Rh7CG124300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 414, 416
AclWI GGATC 2 cut(s) 234, 302
AcuI CTGAAG 3 cut(s) 141, 218, 229
AfiI CCNNNNNNNGG 3 cut(s) 172, 298, 401
AluBI AGCT 2 cut(s) 85, 274
AluI AGCT 2 cut(s) 85, 274
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 234, 302
ApeKI GCWGC 1 cut(s) 271
AspLEI GCGC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 19, 187, 280
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 413
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 1 cut(s) 292
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 2 cut(s) 272, 414
BlsI GCNGC 2 cut(s) 273, 415
Bme1390I CCNGG 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 20, 389
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 298, 401
Bse1I ACTGG 2 cut(s) 49, 130
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 67, 424
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 3 cut(s) 172, 298, 401
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 49, 130
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 172, 298, 401
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 2 cut(s) 135, 156
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 5 cut(s) 11, 75, 226, 258, 294
BspACI CCGC 2 cut(s) 414, 416
BspCNI CTCAG 1 cut(s) 15
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 20, 389
BspPI GGATC 2 cut(s) 234, 302
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 2 cut(s) 49, 130
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 5 cut(s) 11, 75, 226, 258, 294
Bst4CI ACNGT 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 127, 369
BstDEI CTNAG 2 cut(s) 23, 88
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 67, 424
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 14, 78, 229, 261, 297
BstMBI GATC 5 cut(s) 11, 75, 226, 258, 294
BstMWI GCNNNNNNNGC 2 cut(s) 229, 373
BstSCI CCNGG 1 cut(s) 290
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 67, 424
BtsIMutI CAGTG 2 cut(s) 137, 427
Cac8I GCNNGC 2 cut(s) 127, 369
CfoI GCGC 1 cut(s) 187
Cfr42I CCGCGG 1 cut(s) 417
CviAII CATG 1 cut(s) 167
CviJI RGCY 9 cut(s) 19, 85, 119, 125, 274, 285, 307, 320, 388
CviKI_1 RGCY 9 cut(s) 19, 85, 119, 125, 274, 285, 307, 320, 388
DdeI CTNAG 2 cut(s) 23, 88
DpnI GATC 5 cut(s) 13, 77, 228, 260, 296
DpnII GATC 5 cut(s) 11, 75, 226, 258, 294
Eco32I GATATC 1 cut(s) 145
Eco57I CTGAAG 3 cut(s) 141, 218, 229
EcoRV GATATC 1 cut(s) 145
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 99, 168, 194, 221
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 272, 414
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 272, 414
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 272, 414
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HpaII CCGG 1 cut(s) 292
HphI GGTGA 3 cut(s) 19, 187, 280
Hpy188I TCNGA 2 cut(s) 149, 248
Hpy188III TCNNGA 4 cut(s) 22, 140, 236, 323
HpyAV CCTTC 4 cut(s) 175, 245, 296, 373
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 65, 135, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 373
HpyF3I CTNAG 2 cut(s) 23, 88
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 258
KspI CCGCGG 1 cut(s) 417
Kzo9I GATC 5 cut(s) 11, 75, 226, 258, 294
LmnI GCTCC 3 cut(s) 24, 364, 393
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 360
MalI GATC 5 cut(s) 13, 77, 228, 260, 296
MboI GATC 5 cut(s) 11, 75, 226, 258, 294
MboII GAAGA 3 cut(s) 190, 217, 220
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 369
MnlI CCTC 5 cut(s) 9, 29, 52, 85, 163
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 274, 416
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 292
Mva1269I GAATGC 2 cut(s) 135, 156
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 229, 373
NciI CCSGG 1 cut(s) 292
NdeII GATC 5 cut(s) 11, 75, 226, 258, 294
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 20, 389
PctI GAATGC 2 cut(s) 135, 156
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 2 cut(s) 273, 415
Ppu21I YACGTR 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 20, 389
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 274
SacII CCGCGG 1 cut(s) 417
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 272, 414
Sau3AI GATC 5 cut(s) 11, 75, 226, 258, 294
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 40, 87, 174, 276, 363, 401
SfaNI GCATC 1 cut(s) 52
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SsiI CCGC 2 cut(s) 414, 416
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 14, 324
TauI GCSGC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 137
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 114, 396
TspRI CASTG 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 172
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.