Rh7CG124300

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0021266
Physical Location & Seq
Forward (+)
9646092 .. 9646370
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG124300.1

Sequence Viewer

Length: 279 bp
ATGCCTTTCTTCAATCACGAGGTGGTGAAGAAGGCACTGGTTTTGGCCATGGAGAAGAATGACACTATGCTGGATCTGCTTCAGGAGTGCTTCAGCGAAGGACTGATAACAGTCAACCAGATGACAAAAGGCTTTAGCCGGATTAAGAACAAGCTAGATGACTTGGCTCTCGACATTCCAACTGCAAGTGAGAAATTCAGCTTCTATGTGGAGCATGCACAGGAGAAGGGTTGGGTCTTGCCTACTTTTGGTTCATCTGCTGCGGATTGTTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

5.21

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 1 - 78 1.1e-19 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021266)

Species Orthologous Gene IDs
pyrus_communis pycom06g14340
rosa_chinensis RchiOBHm_Chr7g0191521
rosa_multiflora Rmu_sc0003634.1_g000004
rosa_samantha Rh7CG124000 Rh7CG124300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 65, 76
AdeI CACNNNGTG 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 154, 201
AluI AGCT 2 cut(s) 154, 201
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 37
BalI TGGCCA 1 cut(s) 47
BauI CACGAG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 247
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 47
BspPI GGATC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 35, 274
Cac8I GCNNGC 1 cut(s) 216
CviAII CATG 2 cut(s) 49, 215
CviJI RGCY 6 cut(s) 47, 132, 138, 154, 167, 201
CviKI_1 RGCY 6 cut(s) 47, 132, 138, 154, 167, 201
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 65, 76
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 52, 218
FaiI YATR 4 cut(s) 50, 68, 207, 216
FatI CATG 2 cut(s) 48, 214
Fnu4HI GCNGC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 139
Hin1II CATG 2 cut(s) 52, 218
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 17, 83, 170
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 25, 92, 220
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 185, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 2 cut(s) 52, 218
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 23, 56, 68, 131, 152, 206
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 155
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 40, 67
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 1 cut(s) 13
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 52, 218
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 73
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 73
SetI ASST 3 cut(s) 24, 156, 203
SphI GCATGC 1 cut(s) 218
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 194
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 218
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.