Rmu_sc0003634.1_g000004

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003634.1
OG0021266
Physical Location & Seq
Reverse (-)
9713 .. 10474
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003634.1_g000004.1.cds

Sequence Viewer

Length: 693 bp
atgctgaggattcagaattgggcaccttggatgcttcaaattagttctctctatctggcccgggctgtggttgatgatgtattgtctccgctgaagttggaagaaattggcagcaggttgccaccgaattgcagtgcaactgtgactgtgcgaatggctcagtcactggatacgaaggacaagattacaaagctcttagatcggtatgaaagtgggggtgtcgtggctgaagcctgccagtgcattcgtgatattggaatgcctttcttcaatcacgaggtggtgaagaaggcactggttttggccatggagaagaatgacactatactggatctgcttcaggagtgcttcagcgaaggactgataacagtcaaccagatgacaaagggctttagccggattaaggacaagctagatgacttggctccttgcttcagcgaaggactgataacagtcaaccagatgacaaaaggctttagccggattaagaacaagctagatgacttggctcctgacattccaactgcaagtgagaaattcagcttctatgtggagcacgcacaggagaagggttgggtcttgcctacttttggttcatctctgctgcggattgttctcactgaccataggctacaaatgtattttcaattgcttctctcatatatgttgttgcccatgttttgtactgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

230

Amino Acids

26.05

Weight (kDa)

5.96

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021266)

Species Orthologous Gene IDs
pyrus_communis pycom06g14340
rosa_chinensis RchiOBHm_Chr7g0191521
rosa_multiflora Rmu_sc0003634.1_g000004
rosa_samantha Rh7CG124000 Rh7CG124300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 2 cut(s) 89, 607
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 5 cut(s) 113, 249, 323, 334, 418
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 3 cut(s) 67, 403, 590
AgsI TTSAA 3 cut(s) 38, 271, 647
AluBI AGCT 4 cut(s) 193, 412, 496, 543
AluI AGCT 4 cut(s) 193, 412, 496, 543
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 57, 303
ApeKI GCWGC 2 cut(s) 111, 604
ApoI RAATTY 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 2 cut(s) 61, 62
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 558
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 123, 591
BciVI GTATCC 1 cut(s) 163
BcnI CCSGG 2 cut(s) 61, 62
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 413, 497
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 2 cut(s) 112, 605
BlsI GCNGC 2 cut(s) 113, 606
Bme1390I CCNGG 2 cut(s) 61, 62
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 3 cut(s) 24, 426, 510
BmrFI CCNGG 2 cut(s) 61, 62
BmsI GCATC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 5
BpuMI CCSGG 2 cut(s) 61, 62
BsaJI CCNNGG 3 cut(s) 26, 60, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 403, 590
Bse1I ACTGG 4 cut(s) 171, 238, 300, 333
BseDI CCNNGG 3 cut(s) 26, 60, 306
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 67, 403, 590
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 4 cut(s) 171, 238, 300, 333
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 2 cut(s) 123, 591
BshFI GGCC 2 cut(s) 59, 305
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 61, 397, 481
BslI CCNNNNNNNGG 3 cut(s) 67, 403, 590
BsmAI GTCTC 1 cut(s) 90
BsmI GAATGC 2 cut(s) 243, 264
BsnI GGCC 2 cut(s) 59, 305
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 25, 558
Bsp143I GATC 2 cut(s) 199, 331
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 89, 607
BspANI GGCC 2 cut(s) 59, 305
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 24, 426, 510
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 22
BsrI ACTGG 4 cut(s) 171, 238, 300, 333
BssECI CCNNGG 3 cut(s) 26, 60, 306
BssMI GATC 2 cut(s) 199, 331
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 2 cut(s) 26, 306
Bst2BI CACGAG 1 cut(s) 275
Bst4CI ACNGT 5 cut(s) 142, 148, 370, 454, 688
BstC8I GCNNGC 2 cut(s) 235, 558
BstDEI CTNAG 3 cut(s) 5, 159, 196
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 2 cut(s) 202, 334
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 199, 331
BstSCI CCNGG 2 cut(s) 59, 60
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 123, 591
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 59, 305
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 5 cut(s) 139, 164, 245, 293, 618
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 235, 558
CaiI CAGNNNCTG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 58
Cfr9I CCCGGG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 684
CviAII CATG 2 cut(s) 307, 676
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 3 cut(s) 5, 159, 196
DpnI GATC 2 cut(s) 201, 333
DpnII GATC 2 cut(s) 199, 331
DraIII CACNNNGTG 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 26, 306
Eco57I CTGAAG 5 cut(s) 113, 249, 323, 334, 418
Eco88I CYCGRG 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 26, 306
ErhI CCWWGG 2 cut(s) 26, 306
FaeI CATG 2 cut(s) 310, 679
FaiI YATR 9 cut(s) 207, 308, 326, 549, 627, 661, 663, 665, 677
FatI CATG 2 cut(s) 306, 675
Fnu4HI GCNGC 2 cut(s) 112, 605
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 112, 605
FspBI CTAG 2 cut(s) 413, 497
GluI GCNGC 2 cut(s) 112, 605
HaeIII GGCC 2 cut(s) 59, 305
HapII CCGG 3 cut(s) 61, 397, 481
Hin1II CATG 2 cut(s) 310, 679
HincII GTYRAC 2 cut(s) 373, 457
HindII GTYRAC 2 cut(s) 373, 457
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 61, 397, 481
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 373, 457
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 4 cut(s) 248, 275, 341, 512
Hpy8I GTNNAC 2 cut(s) 373, 457
HpyAV CCTTC 5 cut(s) 169, 283, 350, 434, 562
HpyCH4III ACNGT 5 cut(s) 142, 148, 370, 454, 688
HpyCH4V TGCA 4 cut(s) 132, 137, 243, 527
HpyF3I CTNAG 3 cut(s) 5, 159, 196
Hsp92II CATG 2 cut(s) 310, 679
Kzo9I GATC 2 cut(s) 199, 331
LmnI GCTCC 3 cut(s) 430, 514, 553
Lsp1109I GCAGC 2 cut(s) 123, 591
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 413, 497
MaeIII GTNAC 2 cut(s) 142, 162
MalI GATC 2 cut(s) 201, 333
MboI GATC 2 cut(s) 199, 331
MboII GAAGA 4 cut(s) 113, 259, 298, 325
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 25, 558
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 6 cut(s) 16, 39, 105, 127, 536, 647
MluNI TGGCCA 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 78, 545
MnlI CCTC 1 cut(s) 271
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 3 cut(s) 402, 486, 691
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 3 cut(s) 61, 397, 481
MspR9I CCNGG 2 cut(s) 61, 62
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 2 cut(s) 243, 264
NciI CCSGG 2 cut(s) 61, 62
NcoI CCATGG 1 cut(s) 306
NdeII GATC 2 cut(s) 199, 331
NlaIII CATG 2 cut(s) 310, 679
NlaIV GGNNCC 3 cut(s) 24, 426, 510
NmuCI GTSAC 2 cut(s) 142, 162
PctI GAATGC 2 cut(s) 243, 264
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 113, 606
PspN4I GGNNCC 3 cut(s) 24, 426, 510
PspPI GGNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
SaqAI TTAA 3 cut(s) 402, 486, 691
SatI GCNGC 2 cut(s) 112, 605
Sau3AI GATC 2 cut(s) 199, 331
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 61, 62
SduI GDGCHC 2 cut(s) 25, 558
SetI ASST 7 cut(s) 28, 119, 195, 282, 414, 498, 545
SfaNI GCATC 1 cut(s) 21
SmaI CCCGGG 1 cut(s) 62
SrfI GCCCGGGC 1 cut(s) 62
Sse9I AATT 6 cut(s) 16, 39, 105, 127, 536, 647
SsiI CCGC 2 cut(s) 89, 607
SspMI CTAG 2 cut(s) 413, 497
StyD4I CCNGG 2 cut(s) 59, 60
StyI CCWWGG 2 cut(s) 26, 306
TaaI ACNGT 5 cut(s) 142, 148, 370, 454, 688
TasI AATT 6 cut(s) 16, 39, 105, 127, 536, 647
TatI WGTACW 1 cut(s) 683
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 3 cut(s) 402, 486, 691
Tru9I TTAA 3 cut(s) 402, 486, 691
TscAI CASTG 5 cut(s) 139, 171, 245, 300, 625
TseFI GTSAC 2 cut(s) 142, 162
TseI GCWGC 2 cut(s) 111, 604
Tsp45I GTSAC 2 cut(s) 142, 162
TspDTI ATGAA 2 cut(s) 222, 585
TspMI CCCGGG 1 cut(s) 60
TspRI CASTG 5 cut(s) 139, 171, 245, 300, 625
XapI RAATTY 1 cut(s) 536
XmaI CCCGGG 1 cut(s) 60
XspI CTAG 2 cut(s) 413, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.