pycom06g15220

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012614
Physical Location & Seq
Reverse (-)
19794223 .. 19795211
989 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGGAACCCAAATCTCCTTCAAAACTTAAGCTCTCAATCATGGGATCTACTCAATATAAACAGGCATTTAAAACAAGTATTGTGATCATAGTTATAATGCTCTTGTTCTTTGGTGCGTATTTCGGATTTAACTCCACGAAAGGCCGTAGTGCATCTAAGGGGTCATACTTTACTGTGGTGGTTGATTGTGGAAGCACGGGTACCCGAGTTAACGTGTACAAGTGGCTGGTAACGGGTGTTAGTGGTAAGGAATTGCCTACATTGTTGTACTCTTATCCGGATAATTCAACTAAGGGTATGGTTTCGAAGAGCTGTAAGTATCACTGTCTGCAAACTGAGCCTGGTTTGGATAAATTTGTTGGAAACTTGTCAGGAGTAAGAGCGTCTTTGGAACCACTAATTACATTGGCTGAACATAAGGTTCCTTCCGAAAGACACAGAGAGACTCCTATTTTTGTTCTAGCTACTGCTGGATTAAGGAGATTGGCAGTGGAGGATTCTAGGCAGGTCTTAGATAATATCAAATCCGTCCTAAAAGCATGTTCTTTATTGTACAAAAATAGTTGGATTAGGGTGTTGAGTGGCAAAGAAGAAGCTTATTATGGTTGGGTTGCTCTAAATTATAAAAGCCGTAGTTTTCAGAATCCTTCAAGGTCGCCCACTTTGGGACTTCTTGACTTGGGAGGTTCATCGTTGCAGGTTGTAGTGGAAACTGATGGTGCAAGAGAAGATGCAAACTTGCTGAGATCAAAATTTGGCTATGTTGAACACGAGATTTTAGCCTACTCATTGTCAGAATTCGGATTAAATGAAGCATTTGATCGGACAGTTGCTATGCTGAGCCAATGCAGAGAAAGTGCTGCAGGTGTATTAGAGATCAGACATCCTTGTCTTCGTACTGATGTGGTCCAAAACTATACATGTCATTGGCCAATTGCAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0004382 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006152 GO:0006163 GO:0006195 GO:0006213 GO:0006220 GO:0006244 GO:0006256 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008406 GO:0009056 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009125 GO:0009126 GO:0009128 GO:0009132 GO:0009134 GO:0009135 GO:0009137 GO:0009138 GO:0009140 GO:0009150 GO:0009154 GO:0009158 GO:0009161 GO:0009164 GO:0009166 GO:0009167 GO:0009169 GO:0009179 GO:0009181 GO:0009185 GO:0009191 GO:0009193 GO:0009195 GO:0009218 GO:0009222 GO:0009259 GO:0009261 GO:0009653 GO:0009887 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0012505 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0018130 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0022414 GO:0030173 GO:0030334 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031984 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0035262 GO:0040012 GO:0042278 GO:0042454 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043262 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045134 GO:0045137 GO:0046031 GO:0046032 GO:0046048 GO:0046128 GO:0046130 GO:0046131 GO:0046133 GO:0046135 GO:0046434 GO:0046483 GO:0046700 GO:0046710 GO:0046712 GO:0048513 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051270 GO:0055086 GO:0060049 GO:0060050 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0080090 GO:0098588 GO:0098791 GO:1901068 GO:1901069 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1903018 GO:1903020 GO:2000112 GO:2000145
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

316

Amino Acids

34.97

Weight (kDa)

9.2

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 55 - 306 4.8e-44 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 95, 624
AarI CACCTGC 1 cut(s) 854
AasI GACNNNNNNGTC 1 cut(s) 888
Acc36I ACCTGC 3 cut(s) 496, 688, 854
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 277
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 929
AcsI RAATTY 3 cut(s) 353, 752, 797
AfaI GTAC 5 cut(s) 202, 218, 269, 554, 898
AfiI CCNNNNNNNGG 1 cut(s) 665
AflII CTTAAG 1 cut(s) 26
AflIII ACRYGT 2 cut(s) 213, 920
AgsI TTSAA 4 cut(s) 21, 288, 651, 767
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 31, 312, 464, 596
AluI AGCT 4 cut(s) 31, 312, 464, 596
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 142, 929
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 3 cut(s) 353, 752, 797
Asp718I GGTACC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 907
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 907
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BalI TGGCCA 1 cut(s) 931
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 884
BbvI GCAGC 1 cut(s) 847
BccI CCATC 1 cut(s) 710
BceAI ACGGC 2 cut(s) 129, 615
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 461, 501
BfmI CTRYAG 1 cut(s) 861
BfrI CTTAAG 1 cut(s) 26
BfuAI ACCTGC 3 cut(s) 496, 688, 854
BisI GCNGC 1 cut(s) 861
BlpI GCTNAGC 1 cut(s) 839
BlsI GCNGC 1 cut(s) 862
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 907
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 4 cut(s) 6, 202, 393, 423
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 161, 721
BpiI GAAGAC 1 cut(s) 884
Bpu1102I GCTNAGC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 883
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 327, 734, 830
BseXI GCAGC 1 cut(s) 847
BshFI GGCC 2 cut(s) 144, 931
BshNI GGYRCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 2 cut(s) 144, 931
BsoBI CYCGRG 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 277
Bsp1407I TGTACA 2 cut(s) 216, 552
Bsp143I GATC 5 cut(s) 44, 84, 746, 820, 876
Bsp1720I GCTNAGC 1 cut(s) 839
BspANI GGCC 2 cut(s) 144, 931
BspCNI CTCAG 3 cut(s) 328, 735, 831
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 6, 202, 393, 423
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 3 cut(s) 496, 688, 854
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 26
BsrGI TGTACA 2 cut(s) 216, 552
BssMI GATC 5 cut(s) 44, 84, 746, 820, 876
BssSI CACGAG 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 175, 326, 829
Bst6I CTCTTC 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 26
BstAUI TGTACA 2 cut(s) 216, 552
BstBI TTCGAA 1 cut(s) 305
BstDEI CTNAG 6 cut(s) 156, 291, 336, 511, 743, 839
BstF5I GGATG 1 cut(s) 883
BstKTI GATC 5 cut(s) 47, 87, 749, 823, 879
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 5 cut(s) 44, 84, 746, 820, 876
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 543, 924
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 1 cut(s) 847
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 2 cut(s) 144, 931
BtsCI GGATG 1 cut(s) 883
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 322, 495
BveI ACCTGC 3 cut(s) 496, 688, 854
Cfr13I GGNCC 1 cut(s) 907
CseI GACGC 1 cut(s) 372
Csp6I GTAC 5 cut(s) 201, 217, 268, 553, 897
CviAII CATG 3 cut(s) 40, 540, 921
CviQI GTAC 5 cut(s) 201, 217, 268, 553, 897
DdeI CTNAG 6 cut(s) 156, 291, 336, 511, 743, 839
DpnI GATC 5 cut(s) 46, 86, 748, 822, 878
DpnII GATC 5 cut(s) 44, 84, 746, 820, 876
DraI TTTAAA 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 888
DseDI GACNNNNNNGTC 1 cut(s) 888
EaeI YGGCCR 1 cut(s) 929
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 907
Eco88I CYCGRG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 3 cut(s) 43, 543, 924
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 39, 539, 920
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 1 cut(s) 870
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 2 cut(s) 461, 501
GluI GCNGC 1 cut(s) 861
HaeIII GGCC 2 cut(s) 144, 931
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 43, 543, 924
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 3 cut(s) 445, 497, 643
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 211, 217
Hpy188I TCNGA 7 cut(s) 125, 430, 642, 796, 803, 825, 881
Hpy188III TCNNGA 3 cut(s) 278, 372, 674
Hpy8I GTNNAC 2 cut(s) 211, 217
HpyAV CCTTC 3 cut(s) 27, 435, 657
HpyCH4III ACNGT 3 cut(s) 175, 326, 829
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 8 cut(s) 152, 331, 697, 722, 734, 849, 863, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 6 cut(s) 156, 291, 336, 511, 743, 839
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 43, 543, 924
Kpn2I TCCGGA 1 cut(s) 277
KpnI GGTACC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 84
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 5 cut(s) 44, 84, 746, 820, 876
LguI GCTCTTC 1 cut(s) 302
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 2 cut(s) 161, 721
MaeI CTAG 2 cut(s) 461, 501
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 229
MalI GATC 5 cut(s) 46, 86, 748, 822, 878
MboI GATC 5 cut(s) 44, 84, 746, 820, 876
MboII GAAGA 4 cut(s) 319, 602, 740, 884
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 931
MluCI AATT 8 cut(s) 251, 283, 353, 399, 619, 752, 797, 933
MluNI TGGCCA 1 cut(s) 931
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 340, 545
MnlI CCTC 2 cut(s) 487, 677
Mox20I TGGCCA 1 cut(s) 931
MroI TCCGGA 1 cut(s) 277
MscI TGGCCA 1 cut(s) 931
MseI TTAA 6 cut(s) 27, 69, 129, 210, 476, 806
Msp20I TGGCCA 1 cut(s) 931
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 933
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 5 cut(s) 44, 84, 746, 820, 876
NlaIII CATG 3 cut(s) 43, 543, 924
NlaIV GGNNCC 4 cut(s) 6, 202, 393, 423
NspI RCATGY 2 cut(s) 543, 924
NspV TTCGAA 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 854
PciI ACATGT 1 cut(s) 920
PciSI GCTCTTC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 497, 643
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 920
PsiI TTATAA 2 cut(s) 95, 624
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 6, 202, 393, 423
PspPI GGNCC 1 cut(s) 907
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 5 cut(s) 202, 218, 269, 554, 898
RsaNI GTAC 5 cut(s) 201, 217, 268, 553, 897
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 6 cut(s) 27, 69, 129, 210, 476, 806
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 5 cut(s) 44, 84, 746, 820, 876
Sau96I GGNCC 1 cut(s) 907
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 342
SfaNI GCATC 2 cut(s) 161, 721
SfcI CTRYAG 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 907
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 8 cut(s) 251, 283, 353, 399, 619, 752, 797, 933
SspMI CTAG 2 cut(s) 461, 501
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 3 cut(s) 175, 326, 829
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 305
TasI AATT 8 cut(s) 251, 283, 353, 399, 619, 752, 797, 933
TatI WGTACW 3 cut(s) 216, 267, 552
TfiI GAWTC 2 cut(s) 497, 643
Tru1I TTAA 6 cut(s) 27, 69, 129, 210, 476, 806
Tru9I TTAA 6 cut(s) 27, 69, 129, 210, 476, 806
TscAI CASTG 2 cut(s) 329, 495
TseI GCWGC 1 cut(s) 860
TspDTI ATGAA 2 cut(s) 678, 825
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 2 cut(s) 329, 495
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 907
XapI RAATTY 3 cut(s) 353, 752, 797
XceI RCATGY 2 cut(s) 543, 924
XspI CTAG 2 cut(s) 461, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.