pycom06g16440

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007012
Physical Location & Seq
Reverse (-)
20715074 .. 20716630
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16440.3

Sequence Viewer

Length: 1299 bp
ATGAACATCTCCAATTCTGGCTGTGCTTCCCTTTTGAAATCAGTACTTTGTGCAAGGTGTGATCGGTTTTCAGGTGAGCTATTTACCGTCGACTCTGTGATCCGCCCTGTTCCGGTTCTCTGCAACTCAACTGTTTCATCAAATTCATCCCAGTCTAAAGAAGCAGTAACCGATTTTTGCTCCACCGTATGGGACGCATGCCAAAATGTGTCGATTTTGAACTCCCCCTTTAACCCTTCATTACAAGGTGGACCGCCTGCCAAGACCAATGCTAGTGAGCTAACCAAACTCTGGCAATCAAAATCCGCTTTCTGCAGCGCATTTGGCGGAGCCTCTAGTGACGAATCAGTATGTTTCAATGGCGAGCCGGTCACACTGAATGATTCCGGCATTCCCATCCCCCCACATGGTTTGTGCCTCGAGAAAATTGGAAATGGATCTTACCTCAACATGGTTGCTCATCCGGATGGCTCCAACCGTGCATTTTTCTCGACCCAGGAAGGCAAAATTTGGCTGGCAACAATTCCTGAAGATGGATCAAGAGGAGTAATGGGGCTTGATGAGTCAAGTCCCTTTGTTGATCTAACCGATGAGGTTCATTTCGATACTGAGTTTGGAATGATGGGGATGGCGTTCCATCCCAATTTCGCGCAAAATGGTCGGTTTTTTGCTTCGTTCAACTGTGACAAGATTAAGTGGCCTGGATGCACTGGACGATGTTCATGTAATTCAGATGTAGATTGTGATCCTTCGAAGCTAGGTTCCGATAATGGTGCTCAGCCGTGCCAGTACCAAAGTGTTGTAGCAGAATATTCTGCTAATGGTACTGCATCCCAGCCTTCCTTGTTTTCATACTTCCTGTTGTGCCTTTTTTTCATGAAAACTGACCGCAATGCTCCTCCCAATGAATCCTACTGCCAGGCAACGAGCGCTACACCAATGGAAGTAAGGAGGATATTTACCATGGGCCTTCCTTTCACAGGTCATCATGCAGGACAGATACTCTTTGGACCGGAAGATGGGTACTTGTACTTCATAATGGGAGATGGTGGCGGTGTAGGCGATCCATACAATTTCTCTCAAAACAAGAAATCTTTGCTCGGAAAGATTATGAGGCTCGACGTTGATAATGTACCAAGTGAGTACCAGCATTTCTGCTACCAAAACCAATCTGCTTCCTTTTGCACATTTGATAACCTTGCAATGTATTTCCAGGTGCAGCAGAAATGGATAAACTTGGTCTGTGGGGAAACTACTCCATCCCCAAAGACAATCCATTCACCGAAGATCCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Folate_rec GSDH

Protein Analysis

433

Amino Acids

47.04

Weight (kDa)

5.1

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 189, 291
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 650
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 6 cut(s) 103, 254, 306, 327, 889, 1053
AclWI GGATC 6 cut(s) 94, 445, 544, 740, 1058, 1282
AcsI RAATTY 2 cut(s) 142, 507
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 7 cut(s) 45, 791, 826, 1025, 1031, 1134, 1145
AfeI AGCGCT 1 cut(s) 931
AfiI CCNNNNNNNGG 8 cut(s) 112, 189, 291, 407, 451, 533, 980, 1019
AgsI TTSAA 4 cut(s) 37, 220, 358, 679
AjnI CCWGG 4 cut(s) 495, 700, 918, 1212
AluBI AGCT 3 cut(s) 79, 280, 757
AluI AGCT 3 cut(s) 79, 280, 757
Alw21I GWGCWC 1 cut(s) 778
AlwI GGATC 6 cut(s) 94, 445, 544, 740, 1058, 1282
Ama87I CYCGRG 1 cut(s) 419
Aor13HI TCCGGA 1 cut(s) 463
Aor51HI AGCGCT 1 cut(s) 931
AoxI GGCC 2 cut(s) 698, 967
ApeKI GCWGC 2 cut(s) 315, 1219
ApoI RAATTY 2 cut(s) 142, 507
AspLEI GCGC 3 cut(s) 320, 652, 932
AspS9I GGNCC 3 cut(s) 251, 967, 1010
AsuHPI GGTGA 2 cut(s) 86, 1272
AsuII TTCGAA 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 2 cut(s) 251, 1010
BarI GAAGNNNNNNTAC 2 cut(s) 1016, 1048
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 2 cut(s) 327, 1231
BccI CCATC 9 cut(s) 404, 461, 527, 616, 622, 645, 1013, 1040, 1267
BceAI ACGGC 1 cut(s) 766
BcgI CGANNNNNNTGC 6 cut(s) 471, 505, 641, 675, 755, 789
BciT130I CCWGG 4 cut(s) 497, 702, 920, 1214
BfaI CTAG 3 cut(s) 273, 336, 758
BfmI CTRYAG 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 933
BisI GCNGC 2 cut(s) 316, 1220
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 2 cut(s) 317, 1221
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 4 cut(s) 497, 702, 920, 1214
Bme18I GGWCC 2 cut(s) 251, 1010
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 3 cut(s) 251, 967, 1010
BmiI GGNNCC 3 cut(s) 331, 472, 763
BmrFI CCNGG 4 cut(s) 497, 702, 920, 1214
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 695, 839
BmuI ACTGGG 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 777
Bpu14I TTCGAA 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 744
BsaJI CCNNGG 2 cut(s) 495, 963
BsaWI WCCGGW 3 cut(s) 112, 463, 1012
Bsc4I CCNNNNNNNGG 8 cut(s) 112, 189, 291, 407, 451, 533, 980, 1019
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 3 cut(s) 151, 715, 787
Bse3DI GCAATG 2 cut(s) 898, 1209
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 4 cut(s) 497, 702, 920, 1214
BseDI CCNNGG 2 cut(s) 495, 963
BseGI GGATG 9 cut(s) 146, 396, 460, 472, 633, 637, 710, 830, 1259
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 8 cut(s) 112, 189, 291, 407, 451, 533, 980, 1019
BseMI GCAATG 2 cut(s) 898, 1209
BseMII CTCAG 2 cut(s) 600, 791
BseNI ACTGG 3 cut(s) 151, 715, 787
BseRI GAGGAG 2 cut(s) 558, 888
BseXI GCAGC 2 cut(s) 327, 1231
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 1238
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 700, 969
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 5 cut(s) 113, 368, 387, 464, 1013
BslFI GGGAC 2 cut(s) 206, 555
BslI CCNNNNNNNGG 8 cut(s) 112, 189, 291, 407, 451, 533, 980, 1019
BsmFI GGGAC 2 cut(s) 206, 555
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 2 cut(s) 700, 969
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 752
Bsp1286I GDGCHC 1 cut(s) 778
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 6 cut(s) 103, 254, 306, 327, 889, 1053
BspANI GGCC 2 cut(s) 700, 969
BspCNI CTCAG 2 cut(s) 601, 790
BspEI TCCGGA 1 cut(s) 463
BspFNI CGCG 1 cut(s) 650
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 3 cut(s) 331, 472, 763
BspMAI CTGCAG 1 cut(s) 317
BspPI GGATC 6 cut(s) 94, 445, 544, 740, 1058, 1282
BspT104I TTCGAA 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 898, 1209
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 3 cut(s) 151, 715, 787
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 495, 963
BssMI GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 4 cut(s) 497, 702, 920, 1214
Bst4CI ACNGT 5 cut(s) 88, 133, 187, 479, 683
BstBI TTCGAA 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 199, 258, 365, 516
BstDEI CTNAG 2 cut(s) 609, 777
BstDSI CCRYGG 1 cut(s) 963
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 9 cut(s) 146, 396, 460, 472, 633, 637, 710, 830, 1259
BstFNI CGCG 1 cut(s) 650
BstH2I RGCGCY 1 cut(s) 933
BstHHI GCGC 3 cut(s) 320, 652, 932
BstKTI GATC 8 cut(s) 64, 102, 440, 539, 583, 748, 1066, 1290
BstMBI GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
BstMWI GCNNNNNNNGC 3 cut(s) 324, 929, 1059
BstNI CCWGG 4 cut(s) 497, 702, 920, 1214
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 4 cut(s) 495, 700, 918, 1212
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 2 cut(s) 327, 1231
BstX2I RGATCY 2 cut(s) 437, 1287
BstYI RGATCY 2 cut(s) 437, 1287
BsuRI GGCC 2 cut(s) 700, 969
BtgI CCRYGG 1 cut(s) 963
BtsCI GGATG 9 cut(s) 146, 396, 460, 472, 633, 637, 710, 830, 1259
BtsIMutI CAGTG 2 cut(s) 374, 708
Cac8I GCNNGC 4 cut(s) 199, 258, 365, 516
CciI TCATGA 1 cut(s) 876
CfoI GCGC 3 cut(s) 320, 652, 932
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 251, 967, 1010
CseI GACGC 1 cut(s) 203
Csp6I GTAC 7 cut(s) 44, 790, 825, 1024, 1030, 1133, 1144
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 7 cut(s) 198, 407, 451, 723, 877, 964, 989
CviQI GTAC 7 cut(s) 44, 790, 825, 1024, 1030, 1133, 1144
DdeI CTNAG 2 cut(s) 609, 777
DpnI GATC 8 cut(s) 63, 101, 439, 538, 582, 747, 1065, 1289
DpnII GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
EciI GGCGGA 2 cut(s) 92, 342
Eco130I CCWWGG 1 cut(s) 963
Eco47I GGWCC 2 cut(s) 251, 1010
Eco47III AGCGCT 1 cut(s) 931
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoRII CCWGG 4 cut(s) 495, 700, 918, 1212
EcoT14I CCWWGG 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 963
FaeI CATG 7 cut(s) 201, 410, 454, 726, 880, 967, 992
FaqI GGGAC 2 cut(s) 206, 555
FatI CATG 7 cut(s) 197, 406, 450, 722, 876, 963, 988
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 316, 1220
FokI GGATG 9 cut(s) 133, 383, 447, 479, 624, 640, 717, 817, 1246
Fsp4HI GCNGC 2 cut(s) 316, 1220
FspBI CTAG 3 cut(s) 273, 336, 758
GlaI GCGC 3 cut(s) 319, 651, 931
GluI GCNGC 2 cut(s) 316, 1220
GsaI CCCAGC 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 933
HaeIII GGCC 2 cut(s) 700, 969
HapII CCGG 5 cut(s) 113, 368, 387, 464, 1013
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 320, 652, 932
Hin1II CATG 7 cut(s) 201, 410, 454, 726, 880, 967, 992
Hin6I GCGC 3 cut(s) 318, 650, 930
HinP1I GCGC 3 cut(s) 318, 650, 930
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 5 cut(s) 92, 344, 383, 563, 908
HpaII CCGG 5 cut(s) 113, 368, 387, 464, 1013
HphI GGTGA 2 cut(s) 86, 1272
Hpy166II GTNNAC 2 cut(s) 91, 251
Hpy188I TCNGA 3 cut(s) 733, 766, 1103
Hpy188III TCNNGA 6 cut(s) 421, 464, 490, 527, 540, 877
Hpy8I GTNNAC 2 cut(s) 91, 251
Hpy99I CGWCG 2 cut(s) 92, 1124
HpyAV CCTTC 5 cut(s) 246, 494, 759, 849, 980
HpyCH4III ACNGT 5 cut(s) 88, 133, 187, 479, 683
HpyCH4IV ACGT 1 cut(s) 1122
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 929, 1059
HpyF3I CTNAG 2 cut(s) 609, 777
HpySE526I ACGT 1 cut(s) 1122
Hsp92II CATG 7 cut(s) 201, 410, 454, 726, 880, 967, 992
HspAI GCGC 3 cut(s) 318, 650, 930
Kpn2I TCCGGA 1 cut(s) 463
Kzo9I GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
LmnI GCTCC 4 cut(s) 185, 329, 476, 901
Lsp1109I GCAGC 2 cut(s) 327, 1231
LweI GCATC 2 cut(s) 695, 839
MaeI CTAG 3 cut(s) 273, 336, 758
MaeII ACGT 1 cut(s) 1122
MaeIII GTNAC 4 cut(s) 166, 338, 370, 683
MalI GATC 8 cut(s) 63, 101, 439, 538, 582, 747, 1065, 1289
MboI GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
MboII GAAGA 3 cut(s) 542, 1028, 1297
MflI RGATCY 2 cut(s) 437, 1287
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 8 cut(s) 13, 142, 426, 507, 522, 643, 727, 1072
MlyI GAGTC 2 cut(s) 86, 572
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 8 cut(s) 343, 428, 455, 536, 586, 909, 945, 1107
MroI TCCGGA 1 cut(s) 463
MseI TTAA 2 cut(s) 231, 693
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 5 cut(s) 113, 368, 387, 464, 1013
MspR9I CCNGG 4 cut(s) 497, 702, 920, 1214
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 4 cut(s) 497, 702, 920, 1214
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 3 cut(s) 324, 929, 1059
NcoI CCATGG 1 cut(s) 963
NdeII GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
NlaIII CATG 7 cut(s) 201, 410, 454, 726, 880, 967, 992
NlaIV GGNNCC 3 cut(s) 331, 472, 763
NmuCI GTSAC 3 cut(s) 338, 370, 683
NspI RCATGY 1 cut(s) 201
NspV TTCGAA 1 cut(s) 752
PaeI GCATGC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 876
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 344, 383, 908
PflMI CCANNNNNTGG 2 cut(s) 189, 291
PkrI GCNGC 2 cut(s) 317, 1221
PleI GAGTC 2 cut(s) 86, 571
PpsI GAGTC 2 cut(s) 86, 571
Psp6I CCWGG 4 cut(s) 495, 700, 918, 1212
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 4 cut(s) 495, 700, 918, 1212
PspN4I GGNNCC 3 cut(s) 331, 472, 763
PspPI GGNCC 3 cut(s) 251, 967, 1010
PstI CTGCAG 1 cut(s) 317
PsuI RGATCY 2 cut(s) 437, 1287
RsaI GTAC 7 cut(s) 45, 791, 826, 1025, 1031, 1134, 1145
RsaNI GTAC 7 cut(s) 44, 790, 825, 1024, 1030, 1133, 1144
RseI CAYNNNNRTG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 231, 693
SatI GCNGC 2 cut(s) 316, 1220
Sau3AI GATC 8 cut(s) 61, 99, 437, 536, 580, 745, 1063, 1287
Sau96I GGNCC 3 cut(s) 251, 967, 1010
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 2 cut(s) 86, 572
ScrFI CCNGG 4 cut(s) 497, 702, 920, 1214
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 2 cut(s) 695, 839
SfcI CTRYAG 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 752
SinI GGWCC 2 cut(s) 251, 1010
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 201
Sse9I AATT 8 cut(s) 13, 142, 426, 507, 522, 643, 727, 1072
SsiI CCGC 6 cut(s) 103, 254, 306, 327, 889, 1053
SspI AATATT 1 cut(s) 812
SspMI CTAG 3 cut(s) 273, 336, 758
StyD4I CCNGG 4 cut(s) 495, 700, 918, 1212
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 5 cut(s) 88, 133, 187, 479, 683
TaiI ACGT 1 cut(s) 1125
TaqI TCGA 7 cut(s) 90, 212, 420, 491, 603, 752, 1119
TasI AATT 8 cut(s) 13, 142, 426, 507, 522, 643, 727, 1072
TatI WGTACW 2 cut(s) 43, 1029
TfiI GAWTC 3 cut(s) 344, 383, 908
Tru1I TTAA 2 cut(s) 231, 693
Tru9I TTAA 2 cut(s) 231, 693
TscAI CASTG 2 cut(s) 381, 715
TseFI GTSAC 3 cut(s) 338, 370, 683
TseI GCWGC 2 cut(s) 315, 1219
Tsp45I GTSAC 3 cut(s) 338, 370, 683
TspRI CASTG 2 cut(s) 381, 715
Van91I CCANNNNNTGG 2 cut(s) 189, 291
VpaK11BI GGWCC 2 cut(s) 251, 1010
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 2 cut(s) 142, 507
XceI RCATGY 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 3 cut(s) 273, 336, 758
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.