Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0021267

Physical Location & Seq

Genomic Coordinates Forward (+)

22125781 .. 22126125

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAATGTCTTTGATTTAATTGCTTGGAAGAAAGCAAATGTAACTGCACGGTATCATTACTGGCAGGAGCAGAATGCCGATGGGACACTTTGGAGGCTGGGCACTCTTCCACCTGGCCTTCTAACATTTTACGGTCTGACAGAGCCGCTTGATAGGAGATGGCATGTATTAGGACTGGGGTATGATCTGAACATTGACAACCGATTGATTGAGAGCGCGGCAGTGGTTCACTTTAATGGGTTCATGAAGCCGTGGCTGAAGTTGGCCATTGGCAGGTATAAGCCTCTCTGGGAGCGGTATGTAAATCAAAGCCACCCATACCTCCAAGATTGTGTCACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009987 GO:0010191 GO:0010192 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0047262

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

115

Amino Acids

13.39

Weight (kDa)

8.76

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	1 - 88	3.5e-25	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021267)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18310
rosa_chinensis	RchiOBHm_Chr6g0283971
rosa_laevigata	RLG00000012783
rosa_multiflora	Rmu_ssc0000442.1_g000028
rosa_samantha	Rh6AG272200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	218
AciI	CCGC	3 cut(s)	146, 218, 295
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
AoxI	GGCC	2 cut(s)	115, 264
AspLEI	GCGC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	266
BccI	CCATC	2 cut(s)	74, 153
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	146, 219
BlsI	GCNGC	2 cut(s)	147, 220
Bme1390I	CCNGG	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	65, 180
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	65, 180
BseSI	GKGCMC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	117, 266
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	117, 266
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	3 cut(s)	146, 218, 295
BspANI	GGCC	2 cut(s)	117, 266
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	65, 180
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	51, 134
Bst6I	CTCTTC	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	117, 266
BtgI	CCRYGG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	218
CviAII	CATG	2 cut(s)	164, 244
CviJI	RGCY	9 cut(s)	97, 117, 145, 250, 256, 266, 283, 312, 342
CviKI_1	RGCY	9 cut(s)	97, 117, 145, 250, 256, 266, 283, 312, 342
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	167, 247
FaiI	YATR	6 cut(s)	165, 183, 245, 279, 300, 319
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	163, 243
Fnu4HI	GCNGC	2 cut(s)	146, 219
Fsp4HI	GCNGC	2 cut(s)	146, 219
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	2 cut(s)	146, 219
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	117, 266
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	167, 247
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	138, 189
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	51, 134
HpyCH4V	TGCA	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	167, 247
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	67, 292
LpnPI	CCDG	8 cut(s)	46, 50, 83, 99, 126, 161, 259, 274
MaeI	CTAG	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	40, 334
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	40, 98
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	3 cut(s)	87, 294, 332
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	17, 234
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	218
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	167, 247
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	167
PagI	TCATGA	1 cut(s)	243
PctI	GAATGC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	147, 220
Psp6I	CCWGG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	17, 234
SatI	GCNGC	2 cut(s)	146, 219
Sau3AI	GATC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	4 cut(s)	115, 278, 324, 344
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	3 cut(s)	146, 218, 295
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	51, 134
TasI	AATT	1 cut(s)	18
TauI	GCSGC	2 cut(s)	148, 221
Tru1I	TTAA	2 cut(s)	17, 234
Tru9I	TTAA	2 cut(s)	17, 234
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 232, 260
TspRI	CASTG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.