Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0021267

Physical Location & Seq

Genomic Coordinates Forward (+)

22303467 .. 22304021

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAACATATTTGTTTGATTATGCAAATTATGAATGAGAATCGTACCTTGTGGAAATTGGGGACTTTACCCCCAGGTTTGATCACATTTTACTCAACAACAAAGCCACCGGACAAGTCATGGCATGTTCTGGGACTTGGCTATAATCCGAGCATCAGCATGGACGAGATTCGCAATGCTGCAGTGGTGCACTTCAATGGGAATATGAAGCCCTGGCTTGATATTGCCATGAACCAGTTCAAGCCATCCTGGGAAAAGCACGTTGATTATGATCTAGAGTTTGTTCAGGGCTGCAACTTTGGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

6.38

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	4 - 76	8.7e-21	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021267)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18310
rosa_chinensis	RchiOBHm_Chr6g0283971
rosa_laevigata	RLG00000012783
rosa_multiflora	Rmu_ssc0000442.1_g000028
rosa_samantha	Rh6AG272200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	196, 241
AjnI	CCWGG	3 cut(s)	73, 212, 248
Alw21I	GWGCWC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	179, 291
Asp700I	GAANNNNTTC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	166, 278
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	75, 214, 250
BclI	TGATCA	1 cut(s)	81
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	180, 292
BlsI	GCNGC	2 cut(s)	181, 293
Bme1390I	CCNGG	3 cut(s)	75, 214, 250
BmrFI	CCNGG	3 cut(s)	75, 214, 250
BmsI	GCATC	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	73, 212, 249
BsaWI	WCCGGW	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	3 cut(s)	75, 214, 250
BseDI	CCNNGG	3 cut(s)	73, 212, 249
BseGI	GGATG	2 cut(s)	245, 309
BseJI	GATNNNNATC	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	166, 278
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	76, 147
BsmFI	GGGAC	2 cut(s)	76, 147
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	81, 271
BspMAI	CTGCAG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	73, 212, 249
BssMI	GATC	2 cut(s)	81, 271
Bst2UI	CCWGG	3 cut(s)	75, 214, 250
BstF5I	GGATG	2 cut(s)	245, 309
BstKTI	GATC	2 cut(s)	84, 274
BstMBI	GATC	2 cut(s)	81, 271
BstNI	CCWGG	3 cut(s)	75, 214, 250
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	73, 212, 248
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	166, 278
BtsCI	GGATG	2 cut(s)	245, 309
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	120, 125, 160, 229
CviJI	RGCY	6 cut(s)	106, 141, 211, 217, 244, 291
CviKI_1	RGCY	6 cut(s)	106, 141, 211, 217, 244, 291
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	2 cut(s)	83, 273
DpnII	GATC	2 cut(s)	81, 271
EcoRII	CCWGG	3 cut(s)	73, 212, 248
FaeI	CATG	4 cut(s)	123, 128, 163, 232
FaqI	GGGAC	2 cut(s)	76, 147
FatI	CATG	4 cut(s)	119, 124, 159, 228
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	180, 292
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	180, 292
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	180, 292
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	4 cut(s)	123, 128, 163, 232
HinfI	GANTC	2 cut(s)	40, 169
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	4, 25, 182, 190, 294
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	123, 128, 163, 232
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 271
Lsp1109I	GCAGC	2 cut(s)	166, 278
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	261
MalI	GATC	2 cut(s)	83, 273
MboI	GATC	2 cut(s)	81, 271
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	27, 56
MroXI	GAANNNNTTC	1 cut(s)	236
MslI	CAYNNNNRTG	2 cut(s)	158, 195
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	75, 214, 250
MvaI	CCWGG	3 cut(s)	75, 214, 250
NdeII	GATC	2 cut(s)	81, 271
NlaIII	CATG	4 cut(s)	123, 128, 163, 232
NspI	RCATGY	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	40, 169
PkrI	GCNGC	2 cut(s)	181, 293
Psp6I	CCWGG	3 cut(s)	73, 212, 248
PspGI	CCWGG	3 cut(s)	73, 212, 248
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	158, 195
SatI	GCNGC	2 cut(s)	180, 292
Sau3AI	GATC	2 cut(s)	81, 271
ScrFI	CCNGG	3 cut(s)	75, 214, 250
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	50, 79, 264
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	158, 195
Sse9I	AATT	2 cut(s)	27, 56
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	73, 212, 248
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	27, 56
TfiI	GAWTC	2 cut(s)	40, 169
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	2 cut(s)	179, 291
TspDTI	ATGAA	3 cut(s)	47, 221, 245
TspRI	CASTG	1 cut(s)	189
VneI	GTGCAC	1 cut(s)	188
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.