Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0021267

Physical Location & Seq

Genomic Coordinates Reverse (-)

46632667 .. 46633522

Gene Structure 856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTCATTCCATCAGTTCATTCTCAGAATTTTTCTTATAAGACCTACAACACGAAGAGTACAGCAGAACCTAAACAAAAAGGCAAATTGCTAACTACTGGCAGCGGATTATCACTACCGGCAGAATCTGGATATCTTAAGAATGAGAATCGTACCTTGTGGAAATTGGGGACTTTACCCCCAGGTTTGATCACATTTTACTCAACAACAAAGCCACTAGACAAGTCATGGCATGTTCTGGGACTTGGCTATAATCCGAGCATCATCATGGACGAGATTCGCAATGCTGCAGTGGTGCACTTCAATGGGAATATGAAGCCCTGGCTTGATATTGCCATGAACCAGTTCAAGCCAATCTGGGAAAAGCACGTTGATTATGATCTAGAGTTTGTTCAGGGCTGCAACTTTCGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

138

Amino Acids

15.71

Weight (kDa)

9.19

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	47 - 112	1.3e-20	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021267)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18310
rosa_chinensis	RchiOBHm_Chr6g0283971
rosa_laevigata	RLG00000012783
rosa_multiflora	Rmu_ssc0000442.1_g000028
rosa_samantha	Rh6AG272200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AciI	CCGC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	61, 154
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	304, 349
AjnI	CCWGG	2 cut(s)	181, 320
Alw21I	GWGCWC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	102, 287, 399
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	114, 274, 386
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	183, 322
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	2 cut(s)	218, 383
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	103, 288, 400
BlsI	GCNGC	3 cut(s)	104, 289, 401
Bme1390I	CCNGG	2 cut(s)	183, 322
BmrFI	CCNGG	2 cut(s)	183, 322
BmsI	GCATC	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	181, 320
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	103, 343
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	183, 322
BseDI	CCNNGG	2 cut(s)	181, 320
BseGI	GGATG	1 cut(s)	417
BseJI	GATNNNNATC	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	103, 343
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	114, 274, 386
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	184, 255
BsmFI	GGGAC	2 cut(s)	184, 255
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	189, 379
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	103, 343
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	181, 320
BssMI	GATC	2 cut(s)	189, 379
Bst2UI	CCWGG	2 cut(s)	183, 322
Bst6I	CTCTTC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	2 cut(s)	192, 382
BstMBI	GATC	2 cut(s)	189, 379
BstNI	CCWGG	2 cut(s)	183, 322
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	181, 320
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	114, 274, 386
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	60, 153
CviAII	CATG	4 cut(s)	228, 233, 268, 337
CviJI	RGCY	6 cut(s)	214, 249, 319, 325, 352, 399
CviKI_1	RGCY	6 cut(s)	214, 249, 319, 325, 352, 399
CviQI	GTAC	2 cut(s)	60, 153
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	191, 381
DpnII	GATC	2 cut(s)	189, 379
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	181, 320
EcoRV	GATATC	1 cut(s)	134
FaeI	CATG	4 cut(s)	231, 236, 271, 340
FaiI	YATR	8 cut(s)	39, 229, 234, 252, 269, 314, 338, 378
FaqI	GGGAC	2 cut(s)	184, 255
FatI	CATG	4 cut(s)	227, 232, 267, 336
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	103, 288, 400
Fsp4HI	GCNGC	3 cut(s)	103, 288, 400
FspBI	CTAG	2 cut(s)	218, 383
GluI	GCNGC	3 cut(s)	103, 288, 400
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	4 cut(s)	231, 236, 271, 340
HinfI	GANTC	3 cut(s)	125, 148, 277
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	27, 258, 411
Hpy188III	TCNNGA	2 cut(s)	129, 383
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	290, 298, 402
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	231, 236, 271, 340
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 379
Lsp1109I	GCAGC	3 cut(s)	114, 274, 386
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	218, 383
MaeII	ACGT	1 cut(s)	369
MalI	GATC	2 cut(s)	191, 381
MboI	GATC	2 cut(s)	189, 379
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	28, 86, 164
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	266, 303
MspA1I	CMGCKG	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	183, 322
MvaI	CCWGG	2 cut(s)	183, 322
NdeII	GATC	2 cut(s)	189, 379
NlaIII	CATG	4 cut(s)	231, 236, 271, 340
NspI	RCATGY	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	125, 148, 277
PkrI	GCNGC	3 cut(s)	104, 289, 401
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	181, 320
PspGI	CCWGG	2 cut(s)	181, 320
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	61, 154
RsaNI	GTAC	2 cut(s)	60, 153
RseI	CAYNNNNRTG	2 cut(s)	266, 303
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	103, 288, 400
Sau3AI	GATC	2 cut(s)	189, 379
ScrFI	CCNGG	2 cut(s)	183, 322
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	5 cut(s)	47, 73, 158, 187, 372
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	266, 303
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	28, 86, 164
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	218, 383
StyD4I	CCNGG	2 cut(s)	181, 320
TaiI	ACGT	1 cut(s)	372
TasI	AATT	3 cut(s)	28, 86, 164
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	125, 148, 277
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	3 cut(s)	102, 287, 399
TspDTI	ATGAA	3 cut(s)	8, 329, 353
TspRI	CASTG	1 cut(s)	297
Vha464I	CTTAAG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	218, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.