Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000442.1

Orthogroup ID

OG0021267

Physical Location & Seq

Genomic Coordinates Reverse (-)

160809 .. 161102

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000442.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgttaatctcattgcagaatgagaatcgtaccctgtggaaattggggactttacccctaggtttgatcacattttactcaacaacaaagccactggacaagtcatggcatgtccagggacttggctataatccgagcatcagcatggacgagattcgcaatgctacagtggtgcacttcaatgggaatatgaaaccctggcttgatattgccatgaaccagttcaagccaatctgggaaaagcacgttgattatgatctagagtttgttcagggctgcaactttgggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

97

Amino Acids

11.25

Weight (kDa)

6.25

Isoelectric Point (pI)

17.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021267)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18310
rosa_chinensis	RchiOBHm_Chr6g0283971
rosa_laevigata	RLG00000012783
rosa_multiflora	Rmu_ssc0000442.1_g000028
rosa_samantha	Rh6AG272200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	181, 226
AjnI	CCWGG	2 cut(s)	114, 197
Alw21I	GWGCWC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	221
AspA2I	CCTAGG	1 cut(s)	58
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	116, 199
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	2 cut(s)	59, 260
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	116, 199
BmrFI	CCNGG	2 cut(s)	116, 199
BmsI	GCATC	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	58, 115, 197
Bse1I	ACTGG	2 cut(s)	99, 220
Bse3DI	GCAATG	2 cut(s)	11, 166
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	116, 199
BseDI	CCNNGG	3 cut(s)	58, 115, 197
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	255
BseMI	GCAATG	2 cut(s)	11, 166
BseNI	ACTGG	2 cut(s)	99, 220
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	61, 132
BsmFI	GGGAC	2 cut(s)	61, 132
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	66, 256
BsrDI	GCAATG	2 cut(s)	11, 166
BsrI	ACTGG	2 cut(s)	99, 220
BssECI	CCNNGG	3 cut(s)	58, 115, 197
BssMI	GATC	2 cut(s)	66, 256
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	116, 199
Bst4CI	ACNGT	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	69, 259
BstMBI	GATC	2 cut(s)	66, 256
BstNI	CCWGG	2 cut(s)	116, 199
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	114, 197
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	92, 174
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	105, 110, 145, 214
CviJI	RGCY	5 cut(s)	91, 126, 202, 229, 276
CviKI_1	RGCY	5 cut(s)	91, 126, 202, 229, 276
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	2 cut(s)	68, 258
DpnII	GATC	2 cut(s)	66, 256
Eco130I	CCWWGG	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	114, 197
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	4 cut(s)	108, 113, 148, 217
FaiI	YATR	7 cut(s)	106, 111, 129, 146, 191, 215, 255
FaqI	GGGAC	2 cut(s)	61, 132
FatI	CATG	4 cut(s)	104, 109, 144, 213
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	2 cut(s)	59, 260
GluI	GCNGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	108, 113, 148, 217
HinfI	GANTC	2 cut(s)	25, 154
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	16, 175, 279
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	108, 113, 148, 217
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	66, 256
LpnPI	CCDG	9 cut(s)	47, 80, 101, 128, 184, 211, 220, 233, 257
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	59, 260
MaeII	ACGT	1 cut(s)	246
MalI	GATC	2 cut(s)	68, 258
MboI	GATC	2 cut(s)	66, 256
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	143, 180
MspR9I	CCNGG	2 cut(s)	116, 199
MvaI	CCWGG	2 cut(s)	116, 199
NdeII	GATC	2 cut(s)	66, 256
NlaIII	CATG	4 cut(s)	108, 113, 148, 217
NspI	RCATGY	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	25, 154
PkrI	GCNGC	1 cut(s)	278
Psp6I	CCWGG	2 cut(s)	114, 197
PspGI	CCWGG	2 cut(s)	114, 197
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	143, 180
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	66, 256
ScrFI	CCNGG	2 cut(s)	116, 199
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	2 cut(s)	64, 249
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	143, 180
Sse9I	AATT	1 cut(s)	41
SspMI	CTAG	2 cut(s)	59, 260
StyD4I	CCNGG	2 cut(s)	114, 197
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	249
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	25, 154
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	99, 174
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	2 cut(s)	206, 230
TspRI	CASTG	2 cut(s)	99, 174
VneI	GTGCAC	1 cut(s)	173
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	59, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.