pycom06g21410

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021132
Physical Location & Seq
Forward (+)
24065017 .. 24066440
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGAAGGGATTAAGACCTGGATGGGCAGTGAAGGCGATCCTTGTCGTGATATTCACATCTATGTTCTTCCGCTGCGTCTCTGCTGGCCCTGCAGCTGCTGCAACCAACACCAACCACTCTGTTGGTGGAGCTTCCGGTTGGGATCTCTCCTCCAACCTCCAAGCATGGGCTGCTCGCGCCACTTTCCGTGTGGGCGACTCTCTTGTTTTCAGGTACACGCCGGTGCATGATGTGCTGGAAGTGATGAAAATGGACTACGATTTGTGCCACACAATAGACCCAATGGAGACGCACAATGATGGGGAGACAGTTATTCCATTGAGGCAAACCGGAGACAGGTACTTCATATGTGGGAGGCTGGACCACTGTGCCATAGGCCTCAAGCTCCATGTTCTTGTCCTGCCTGCTCTGATGATGAGTCCCAATGTTAATGCAACCTCACCCAGCAGCCCCTTGATCACTAGTCCTCCATCAAATACTGCTAATTCAATTTCCAACAACAGCAGCAGACATGGTCCAGATGGTCAAGCAGTGGGAAATGATCATGTGCTGCCTTCTCCGCCGCCATCTACTTCCAATTACTCGATTAATTCTACAGATGGTTCACCTCCTGATCATGCTACAGGCAATAGTACTACATCTGATGGGCACTTAACTTGGGGCAGCACCTGGATCCAGCCATTGGTTACAGTCGTTGCAGCACTCGTGATCATGCAGCTCATGTTTACCTCTTCTTCGATTCCTTGGTGGAGTGCCACCTCCATAGCTGTGTGTGTTCTCTTCACTCGTGCTGCCCTGTTTCTTCTCGTCACTGTTGTTGCTGCTGAGTTACTTGTCATCATTCATGCTGTCGTATTTCTTTTCATCATTGGAACCATTGTTGCCCATCTTCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

300

Amino Acids

31.95

Weight (kDa)

6.32

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 49 - 126 1.8e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021132)

Species Orthologous Gene IDs
malus_domestica MD06G1238600.v1.1 MD09G1277800.v1.1
prunus_persica Prupe.5G242500_v2.0.a1
pyrus_communis pycom06g21410 pycom09g18720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 682
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 70, 560, 563
AclWI GGATC 4 cut(s) 31, 150, 667, 680
AfaI GTAC 3 cut(s) 215, 341, 634
AfiI CCNNNNNNNGG 3 cut(s) 166, 336, 682
AgsI TTSAA 1 cut(s) 489
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 2 cut(s) 16, 668
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 5 cut(s) 95, 131, 385, 718, 767
AluI AGCT 5 cut(s) 95, 131, 385, 718, 767
Alw26I GTCTC 4 cut(s) 82, 281, 299, 327
AlwI GGATC 4 cut(s) 31, 150, 667, 680
AlwNI CAGNNNCTG 2 cut(s) 98, 669
AoxI GGCC 2 cut(s) 85, 376
AseI ATTAAT 1 cut(s) 588
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 3 cut(s) 86, 361, 515
AsuHPI GGTGA 2 cut(s) 432, 597
AvaII GGWCC 2 cut(s) 361, 515
BaeGI GKGCMC 1 cut(s) 651
BamHI GGATCC 1 cut(s) 672
BauI CACGAG 2 cut(s) 704, 786
BccI CCATC 8 cut(s) 15, 293, 478, 515, 574, 593, 638, 894
BciT130I CCWGG 2 cut(s) 18, 670
BclI TGATCA 4 cut(s) 456, 541, 613, 708
BcoDI GTCTC 4 cut(s) 82, 281, 299, 327
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 3 cut(s) 90, 594, 621
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 18, 670
Bme18I GGWCC 2 cut(s) 361, 515
BmgT120I GGNCC 3 cut(s) 86, 361, 515
BmiI GGNNCC 2 cut(s) 674, 874
BmrFI CCNGG 2 cut(s) 18, 670
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 2 cut(s) 134, 329
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 336, 682
Bse118I RCCGGY 1 cut(s) 220
BseBI CCWGG 2 cut(s) 18, 670
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 166, 336, 682
BseMII CTCAG 1 cut(s) 816
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 651
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 87, 378
BsiSI CCGG 3 cut(s) 135, 221, 330
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 166, 336, 682
BsmAI GTCTC 4 cut(s) 82, 281, 299, 327
BsmBI CGTCTC 2 cut(s) 82, 281
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 2 cut(s) 87, 378
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
BspACI CCGC 3 cut(s) 70, 560, 563
BspANI GGCC 2 cut(s) 87, 378
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 674, 874
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 4 cut(s) 31, 150, 667, 680
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
BssSI CACGAG 2 cut(s) 704, 786
BssT1I CCWWGG 1 cut(s) 743
Bst2BI CACGAG 2 cut(s) 704, 786
Bst2UI CCWGG 2 cut(s) 18, 670
Bst4CI ACNGT 4 cut(s) 310, 368, 691, 814
Bst6I CTCTTC 2 cut(s) 736, 785
BstAPI GCANNNNNTGC 3 cut(s) 98, 170, 232
BstC8I GCNNGC 3 cut(s) 85, 175, 405
BstDEI CTNAG 1 cut(s) 825
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 7 cut(s) 39, 145, 459, 544, 616, 675, 711
BstMAI GTCTC 4 cut(s) 82, 281, 299, 327
BstMBI GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
BstMWI GCNNNNNNNGC 7 cut(s) 32, 89, 98, 170, 176, 232, 559
BstNI CCWGG 2 cut(s) 18, 670
BstSCI CCNGG 2 cut(s) 16, 668
BstSFI CTRYAG 3 cut(s) 90, 594, 621
BstSLI GKGCMC 1 cut(s) 651
BstUI CGCG 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 142, 672
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 2 cut(s) 142, 672
BsuRI GGCC 2 cut(s) 87, 378
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 2 cut(s) 33, 537
BtsIMutI CAGTG 4 cut(s) 33, 364, 537, 810
Cac8I GCNNGC 3 cut(s) 85, 175, 405
CaiI CAGNNNCTG 2 cut(s) 98, 669
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 86, 361, 515
CseI GACGC 2 cut(s) 64, 298
Csp6I GTAC 3 cut(s) 214, 340, 633
CviAII CATG 9 cut(s) 165, 227, 389, 512, 545, 617, 712, 721, 845
CviQI GTAC 3 cut(s) 214, 340, 633
DdeI CTNAG 1 cut(s) 825
DpnI GATC 7 cut(s) 38, 144, 458, 543, 615, 674, 710
DpnII GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
Eam1104I CTCTTC 2 cut(s) 736, 785
EarI CTCTTC 2 cut(s) 736, 785
EciI GGCGGA 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 743
Eco147I AGGCCT 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 361, 515
EcoRII CCWGG 2 cut(s) 16, 668
EcoT14I CCWWGG 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 743
Esp3I CGTCTC 2 cut(s) 82, 281
FaeI CATG 9 cut(s) 168, 230, 392, 515, 548, 620, 715, 724, 848
FaqI GGGAC 1 cut(s) 405
FatI CATG 9 cut(s) 164, 226, 388, 511, 544, 616, 711, 720, 844
FauNDI CATATG 1 cut(s) 347
FbaI TGATCA 4 cut(s) 456, 541, 613, 708
FokI GGATG 1 cut(s) 33
FspBI CTAG 1 cut(s) 462
GlaI GCGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 87, 378
HapII CCGG 3 cut(s) 135, 221, 330
HgaI GACGC 2 cut(s) 64, 298
HhaI GCGC 1 cut(s) 179
Hin1II CATG 9 cut(s) 168, 230, 392, 515, 548, 620, 715, 724, 848
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 3 cut(s) 197, 418, 739
HpaII CCGG 3 cut(s) 135, 221, 330
HphI GGTGA 2 cut(s) 432, 597
Hpy166II GTNNAC 3 cut(s) 216, 605, 726
Hpy188I TCNGA 2 cut(s) 411, 643
Hpy188III TCNNGA 4 cut(s) 46, 518, 611, 706
Hpy8I GTNNAC 3 cut(s) 216, 605, 726
HpyAV CCTTC 2 cut(s) 25, 564
HpyCH4III ACNGT 4 cut(s) 310, 368, 691, 814
HpyCH4V TGCA 6 cut(s) 92, 101, 226, 434, 698, 715
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 89, 98, 170, 176, 232, 559
HpyF3I CTNAG 1 cut(s) 825
Hsp92II CATG 9 cut(s) 168, 230, 392, 515, 548, 620, 715, 724, 848
HspAI GCGC 1 cut(s) 177
Ksp22I TGATCA 4 cut(s) 456, 541, 613, 708
Kzo9I GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
LmnI GCTCC 2 cut(s) 128, 390
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 3 cut(s) 685, 808, 828
MalI GATC 7 cut(s) 38, 144, 458, 543, 615, 674, 710
MboI GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
MboII GAAGA 7 cut(s) 58, 723, 726, 772, 794, 881, 884
MflI RGATCY 2 cut(s) 142, 672
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 4 cut(s) 484, 489, 577, 589
MlyI GAGTC 2 cut(s) 191, 427
MmeI TCCRAC 2 cut(s) 177, 519
MseI TTAA 4 cut(s) 11, 429, 588, 653
MslI CAYNNNNRTG 4 cut(s) 59, 221, 297, 767
MspA1I CMGCKG 2 cut(s) 72, 95
MspI CCGG 3 cut(s) 135, 221, 330
MspR9I CCNGG 2 cut(s) 18, 670
MvaI CCWGG 2 cut(s) 18, 670
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 7 cut(s) 32, 89, 98, 170, 176, 232, 559
NdeI CATATG 1 cut(s) 347
NdeII GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
NlaIII CATG 9 cut(s) 168, 230, 392, 515, 548, 620, 715, 724, 848
NlaIV GGNNCC 2 cut(s) 674, 874
NmuCI GTSAC 1 cut(s) 808
OliI CACNNNNGTG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 378
PfeI GAWTC 1 cut(s) 739
PflFI GACNNNGTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 682
PleI GAGTC 2 cut(s) 191, 426
PpsI GAGTC 2 cut(s) 191, 426
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 16, 668
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 2 cut(s) 16, 668
PspN4I GGNNCC 2 cut(s) 674, 874
PspPI GGNCC 3 cut(s) 86, 361, 515
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 2 cut(s) 98, 669
PsuI RGATCY 2 cut(s) 142, 672
PsyI GACNNNGTC 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 3 cut(s) 215, 341, 634
RsaNI GTAC 3 cut(s) 214, 340, 633
RseI CAYNNNNRTG 4 cut(s) 59, 221, 297, 767
SaqAI TTAA 4 cut(s) 11, 429, 588, 653
Sau3AI GATC 7 cut(s) 36, 142, 456, 541, 613, 672, 708
Sau96I GGNCC 3 cut(s) 86, 361, 515
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 2 cut(s) 191, 427
ScrFI CCNGG 2 cut(s) 18, 670
SduI GDGCHC 1 cut(s) 651
SfcI CTRYAG 3 cut(s) 90, 594, 621
SgrAI CRCCGGYG 1 cut(s) 220
SinI GGWCC 2 cut(s) 361, 515
SmiMI CAYNNNNRTG 4 cut(s) 59, 221, 297, 767
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 4 cut(s) 484, 489, 577, 589
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 3 cut(s) 70, 560, 563
SspMI CTAG 1 cut(s) 462
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 16, 668
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 4 cut(s) 310, 368, 691, 814
TaqI TCGA 2 cut(s) 584, 737
TasI AATT 4 cut(s) 484, 489, 577, 589
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 4 cut(s) 11, 429, 588, 653
Tru9I TTAA 4 cut(s) 11, 429, 588, 653
TscAI CASTG 4 cut(s) 33, 371, 537, 817
TseFI GTSAC 1 cut(s) 808
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 6 cut(s) 17, 260, 334, 833, 853, 884
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 4 cut(s) 33, 371, 537, 817
Tth111I GACNNNGTC 1 cut(s) 513
Van91I CCANNNNNTGG 1 cut(s) 682
VpaK11BI GGWCC 2 cut(s) 361, 515
VspI ATTAAT 1 cut(s) 588
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 187
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.