Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0021894

Physical Location & Seq

Genomic Coordinates Forward (+)

935417 .. 936470

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAATGGTTACGCATCATGTTCCAGTTGTTTGGGAAGTACAGGGACATGTCATTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCGTCTTTTATAAGGCTCAAGCGTTATGAAGAAGCCATTGGACAATGCAGTATTGTACTGGCAGAGGATGAAAATGACGTCAAGGCACTATTTAGGCGGGCAAAAGCCAAAACAGAGCTTGGGCAGACAGATGTTGCGCGGGAAGACTTTCTAAGGGCACGCAAATTTGCACCTCAATACAAAGCTATTGCAAGAGAGTTACGTTTGCTTGCTGAACACGACAAGGCTGTTTATCAGAAACAAAAAGAAATCTGCCAGGGAATTTTCGGACCAACCCCAGAACCTAAACCCAAACGGGATAATTGGTTGATCATCTTTTGGCACTGGTTGTTGTCATTGTTCTGTCGTCTCCTTAGGCGCGAAAGGCATAAAGATGAGGAGTCAAAGATCCTAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

164

Amino Acids

19.41

Weight (kDa)

9.69

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52075
pyrus_communis	pycom07g01200 pycom07g01240 pycom07g01270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AatII	GACGTC	1 cut(s)	171
AccII	CGCG	2 cut(s)	229, 450
AciI	CCGC	2 cut(s)	187, 229
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	2 cut(s)	254, 351
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	41, 147
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	208, 275, 486
AluI	AGCT	3 cut(s)	208, 275, 486
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	472
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	254, 351
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	229, 450
AspS9I	GGNCC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	443
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	25, 153, 419
Bse21I	CCTNAGG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	3 cut(s)	25, 153, 419
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	229, 450
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	399, 477
BspACI	CCGC	2 cut(s)	187, 229
BspFNI	CGCG	2 cut(s)	229, 450
BspPI	GGATC	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	25, 153, 419
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	399, 477
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	189, 250, 300
BstDEI	CTNAG	3 cut(s)	242, 443, 482
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	2 cut(s)	229, 450
BstHHI	GCGC	2 cut(s)	229, 450
BstKTI	GATC	2 cut(s)	402, 480
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	399, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	2 cut(s)	229, 450
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	477
Bsu36I	CCTNAGG	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	189, 250, 300
CfoI	GCGC	2 cut(s)	229, 450
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	40, 146
CviAII	CATG	4 cut(s)	19, 49, 72, 85
CviJI	RGCY	8 cut(s)	59, 106, 125, 197, 208, 275, 317, 486
CviKI_1	RGCY	8 cut(s)	59, 106, 125, 197, 208, 275, 317, 486
CviQI	GTAC	2 cut(s)	40, 146
DdeI	CTNAG	3 cut(s)	242, 443, 482
DpnI	GATC	2 cut(s)	401, 479
DpnII	GATC	2 cut(s)	399, 477
Eco47I	GGWCC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	22, 52, 75, 88
FaiI	YATR	7 cut(s)	20, 50, 73, 86, 101, 117, 459
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	18, 48, 71, 84
FauI	CCCGC	2 cut(s)	180, 222
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	90
GlaI	GCGC	2 cut(s)	228, 449
GluI	GCNGC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	229, 450
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	22, 52, 75, 88
Hin6I	GCGC	2 cut(s)	227, 448
HinP1I	GCGC	2 cut(s)	227, 448
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	327, 359
HpyCH4IV	ACGT	2 cut(s)	168, 292
HpyCH4V	TGCA	3 cut(s)	138, 260, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	3 cut(s)	242, 443, 482
HpySE526I	ACGT	2 cut(s)	168, 292
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	22, 52, 75, 88
HspAI	GCGC	2 cut(s)	227, 448
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	399, 477
LpnPI	CCDG	7 cut(s)	28, 38, 134, 332, 359, 381, 400
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	2 cut(s)	168, 292
MaeIII	GTNAC	2 cut(s)	9, 288
MalI	GATC	2 cut(s)	401, 479
MboI	GATC	2 cut(s)	399, 477
MboII	GAAGA	2 cut(s)	131, 245
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	3 cut(s)	254, 351, 391
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	3 cut(s)	148, 273, 460
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	63, 81
MslI	CAYNNNNRTG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	229, 450
MwoI	GCNNNNNNNGC	1 cut(s)	454
NdeII	GATC	2 cut(s)	399, 477
NlaIII	CATG	4 cut(s)	22, 52, 75, 88
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	2 cut(s)	41, 147
RsaNI	GTAC	2 cut(s)	40, 146
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	63, 81
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	399, 477
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	81, 171, 210, 265, 277, 295, 376, 488
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	254, 351, 391
SsiI	CCGC	2 cut(s)	187, 229
StyD4I	CCNGG	1 cut(s)	345
TaiI	ACGT	2 cut(s)	171, 295
TasI	AATT	3 cut(s)	254, 351, 391
TatI	WGTACW	2 cut(s)	39, 145
Tru1I	TTAA	2 cut(s)	63, 81
Tru9I	TTAA	2 cut(s)	63, 81
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	17, 132, 174
TspRI	CASTG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	254, 351
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.