pycom07g03240

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
2701876 .. 2702220
345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03240.1

Sequence Viewer

Length: 345 bp
ATGCCATCAAAATTAGAAGGGTTTGGGAGCTTAGTCGTAATGAACTCTTTAAAAACAAGATCAATGTGTGACTTCAAGCCTAGCTTTTCGCTCGATCCATCCCCTTCACTAGGTTTGTCTGTACGACTTCCCAACCTAAGTTTTTCCTATCAGAAAAAAAGAATAGAGACCATATCTGCTATCCAAGCTGATAATGAGCCCGAAATTGCTCGTCCTACTGCAAATTTTCACCCGAGCATTTGGGGCGATCGGTTCACACTCTACGACGATTCACAAGACATTGTAATCTCATGCACTTTACTCGCTCTCAAATTTGTACTTTTTCCAATATTTTTGATTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

6.54

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021268)

Species Orthologous Gene IDs
pyrus_communis pycom07g03240
rosa_samantha Rh3AG188200 Rh3AG191700 Rh3AG294700 Rh6BG141000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 223, 311
AfaI GTAC 2 cut(s) 123, 318
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 3 cut(s) 30, 84, 188
AluI AGCT 3 cut(s) 30, 84, 188
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 232
ApoI RAATTY 2 cut(s) 223, 311
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 232
BanII GRGCYC 1 cut(s) 201
BccI CCATC 2 cut(s) 13, 106
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 81, 110
BmeT110I CYCGRG 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 59, 94, 247
BspPI GGATC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 161
BssMI GATC 3 cut(s) 59, 94, 247
BstDEI CTNAG 2 cut(s) 31, 137
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 3 cut(s) 62, 97, 250
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 59, 94, 247
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 185, 243
BtsCI GGATG 1 cut(s) 98
Csp6I GTAC 2 cut(s) 122, 317
CviAII CATG 1 cut(s) 291
CviJI RGCY 5 cut(s) 30, 79, 84, 188, 199
CviKI_1 RGCY 5 cut(s) 30, 79, 84, 188, 199
CviQI GTAC 2 cut(s) 122, 317
DdeI CTNAG 2 cut(s) 31, 137
DpnI GATC 3 cut(s) 61, 96, 249
DpnII GATC 3 cut(s) 59, 94, 247
DraI TTTAAA 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 294
FaiI YATR 2 cut(s) 173, 292
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 1 cut(s) 290
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 201
FspBI CTAG 2 cut(s) 81, 110
Hin1II CATG 1 cut(s) 294
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 11, 114
HpyCH4V TGCA 2 cut(s) 221, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 243
HpyF3I CTNAG 2 cut(s) 31, 137
Hsp92II CATG 1 cut(s) 294
Kzo9I GATC 3 cut(s) 59, 94, 247
LmnI GCTCC 1 cut(s) 27
MaeI CTAG 2 cut(s) 81, 110
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 61, 96, 249
MboI GATC 3 cut(s) 59, 94, 247
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 11, 204, 223, 311
MseI TTAA 2 cut(s) 50, 343
MwoI GCNNNNNNNGC 2 cut(s) 185, 243
NdeII GATC 3 cut(s) 59, 94, 247
NlaIII CATG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 269
Ple19I CGATCG 1 cut(s) 250
PvuI CGATCG 1 cut(s) 250
RsaI GTAC 2 cut(s) 123, 318
RsaNI GTAC 2 cut(s) 122, 317
SaqAI TTAA 2 cut(s) 50, 343
Sau3AI GATC 3 cut(s) 59, 94, 247
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 32, 86, 115, 138, 190
Sse9I AATT 4 cut(s) 11, 204, 223, 311
SspI AATATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 81, 110
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 11, 204, 223, 311
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 50, 343
Tru9I TTAA 2 cut(s) 50, 343
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 2 cut(s) 223, 311
XspI CTAG 2 cut(s) 81, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.