Rh3AG191700

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
18418943 .. 18450271
31329 bp
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UTR
Exon/CDS
Intron
Rh3AG191700.1

Sequence Viewer

Length: 183 bp
ATGTCTGTCCAAACTATTCCAGCAGCTGAATCCCAGATCAATGCTAAGCCAGAAGTTGTTCGGCGCACATCAAATTGTGAACCTAGCATTTGGGGAGATCGGTTTGCTAACTATGCTGAAGACATTCAAATTCACTACCCTCCAATGCTGGAACAACAATTGGTCACATCCCTTCGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.85

Weight (kDa)

4.87

Isoelectric Point (pI)

69.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021268)

Species Orthologous Gene IDs
pyrus_communis pycom07g03240
rosa_samantha Rh3AG188200 Rh3AG191700 Rh3AG294700 Rh6BG141000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 129
Asp700I GAANNNNTTC 2 cut(s) 57, 123
AspLEI GCGC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 35
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 24
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 45
BseGI GGATG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 36, 97
Bsp1720I GCTNAGC 1 cut(s) 45
BssMI GATC 2 cut(s) 36, 97
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 39, 100
BstMBI GATC 2 cut(s) 36, 97
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 66
CviJI RGCY 2 cut(s) 26, 49
CviKI_1 RGCY 2 cut(s) 26, 49
DdeI CTNAG 1 cut(s) 45
DpnI GATC 2 cut(s) 38, 99
DpnII GATC 2 cut(s) 36, 97
Eco57I CTGAAG 1 cut(s) 138
FaiI YATR 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 45
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 36, 97
LpnPI CCDG 4 cut(s) 33, 47, 63, 134
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 38, 99
MboI GATC 2 cut(s) 36, 97
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 158
MluCI AATT 3 cut(s) 73, 129, 158
MnlI CCTC 1 cut(s) 150
MroXI GAANNNNTTC 2 cut(s) 57, 123
MspA1I CMGCKG 1 cut(s) 26
MunI CAATTG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 36, 97
NmuCI GTSAC 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 57, 123
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 26
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 36, 97
SetI ASST 2 cut(s) 28, 85
SgeI CNNG 5 cut(s) 32, 46, 62, 96, 161
Sse9I AATT 3 cut(s) 73, 129, 158
SspMI CTAG 1 cut(s) 84
TasI AATT 3 cut(s) 73, 129, 158
TfiI GAWTC 1 cut(s) 29
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 163
XapI RAATTY 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 57, 123
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.