Rh3AG294700

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
35691243 .. 35694140
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG294700.1

Sequence Viewer

Length: 252 bp
ATGTCGTCTATGCCAATTATTTCTGCATCATTTCAAGTACCACAAATTGCAAAGCTTGAAATTGTTCGCTGGACGGCAAATTTTCCACCAAGCATATGGGGAGATCGCTTCATCAACTATGATTCCCAACACACTATGAAAAATCAAGCTGATCGTATTTCAATGAGGCTCAATGGTTACACGAAGGACTCATTCCGAGCATGGAAGAGTATATACGCGTTGCAACCGTTTCGATCAGTTACACCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.64

Weight (kDa)

10.11

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021268)

Species Orthologous Gene IDs
pyrus_communis pycom07g03240
rosa_samantha Rh3AG188200 Rh3AG191700 Rh3AG294700 Rh6BG141000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 3 cut(s) 35, 59, 162
AluBI AGCT 2 cut(s) 55, 149
AluI AGCT 2 cut(s) 55, 149
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 63
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BmsI GCATC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 218
Bsp143I GATC 3 cut(s) 103, 151, 233
BspFNI CGCG 1 cut(s) 218
BssMI GATC 3 cut(s) 103, 151, 233
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 200
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 3 cut(s) 106, 154, 236
BstMBI GATC 3 cut(s) 103, 151, 233
BstUI CGCG 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 96
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 201
CviJI RGCY 3 cut(s) 55, 149, 169
CviKI_1 RGCY 3 cut(s) 55, 149, 169
CviQI GTAC 1 cut(s) 38
DpnI GATC 3 cut(s) 105, 153, 235
DpnII GATC 3 cut(s) 103, 151, 233
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
FaeI CATG 1 cut(s) 204
FaiI YATR 8 cut(s) 11, 95, 97, 120, 137, 202, 212, 214
FatI CATG 1 cut(s) 200
FauNDI CATATG 1 cut(s) 95
Hin1II CATG 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 122, 188
Hpy188I TCNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 26, 50, 223
Hsp92II CATG 1 cut(s) 204
Kzo9I GATC 3 cut(s) 103, 151, 233
LpnPI CCDG 1 cut(s) 55
LweI GCATC 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 176, 238
MalI GATC 3 cut(s) 105, 153, 235
MboI GATC 3 cut(s) 103, 151, 233
MboII GAAGA 1 cut(s) 217
MluCI AATT 4 cut(s) 15, 45, 60, 79
MluI ACGCGT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 63
MvnI CGCG 1 cut(s) 218
NdeI CATATG 1 cut(s) 95
NdeII GATC 3 cut(s) 103, 151, 233
NlaIII CATG 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 122
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
Sau3AI GATC 3 cut(s) 103, 151, 233
SchI GAGTC 1 cut(s) 182
SetI ASST 3 cut(s) 57, 151, 247
SfaNI GCATC 1 cut(s) 35
SgeI CNNG 9 cut(s) 47, 68, 82, 102, 158, 193, 209, 213, 229
Sse9I AATT 4 cut(s) 15, 45, 60, 79
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 232
TasI AATT 4 cut(s) 15, 45, 60, 79
TfiI GAWTC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 100, 152
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.