pycom07g15570

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020162
Physical Location & Seq
Forward (+)
18033960 .. 18034737
778 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGAATCAAGGAAGGCAAATTCAGATGGTGGGGGGAAGTAATTACATGAACAATCAAGGGCAATACAATGACACAACTTTTACCAAAATCTTTGTGGGAGGGTTGGCCTGGGAGACTCAAAGGGAAACCATGAGAAGGTATTTTGAACAGTTTGGGGAGATCTTGGAGGCTGTTGTGATCACAGATAAAAACACTGGAAGATCCAAGGGTTATGGATTTGTTACATTTAAGGATCCAGAGGCAGCCGTGAGGGCGTGCCAAAATCCATCCCCTGTGATTGATGGAAGGAGGGCAAACTGCAATCTCGCATTTCTTGGTGCACAAAAGACTCGCCCACCAATTCCTCTTCATGGTGCAGGAAGGTTTAGAGCAGCGCATAGGTTGGTGGCTCCACCAGCTGCTTATCATGGATCGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.42

Weight (kDa)

9.85

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 30 - 87 2.6e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46780 AT2G46780
malus_domestica MD07G1159100.v1.1
pyrus_communis pycom01g11220 pycom07g15570 pycom07g15580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 195, 227, 240, 418
AcsI RAATTY 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 135, 350
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 4 cut(s) 195, 227, 240, 418
AoxI GGCC 1 cut(s) 105
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 242, 371, 398
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 322
BamHI GGATCC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 254, 383, 385
BccI CCATC 3 cut(s) 19, 274, 275
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 159
BisI GCNGC 3 cut(s) 243, 372, 399
BlsI GCNGC 3 cut(s) 244, 373, 400
Bme1390I CCNGG 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 234, 390
BmrFI CCNGG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 108, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 350
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 108, 204
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 135, 350
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 3 cut(s) 254, 383, 385
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 135, 350
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 6 cut(s) 159, 177, 200, 232, 410, 414
BspANI GGCC 1 cut(s) 107
BspDI ATCGAT 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 234, 390
BspPI GGATC 4 cut(s) 195, 227, 240, 418
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 108, 204
BssMI GATC 6 cut(s) 159, 177, 200, 232, 410, 414
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 6 cut(s) 162, 180, 203, 235, 413, 417
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 6 cut(s) 159, 177, 200, 232, 410, 414
BstMWI GCNNNNNNNGC 2 cut(s) 251, 395
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 254, 383, 385
BstX2I RGATCY 3 cut(s) 159, 200, 232
BstYI RGATCY 3 cut(s) 159, 200, 232
Bsu15I ATCGAT 1 cut(s) 413
BsuRI GGCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 413
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 376
ClaI ATCGAT 1 cut(s) 413
CviAII CATG 4 cut(s) 46, 130, 350, 407
CviJI RGCY 5 cut(s) 107, 170, 245, 389, 398
CviKI_1 RGCY 5 cut(s) 107, 170, 245, 389, 398
DpnI GATC 6 cut(s) 161, 179, 202, 234, 412, 416
DpnII GATC 6 cut(s) 159, 177, 200, 232, 410, 414
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 49, 133, 353, 410
FaiI YATR 6 cut(s) 47, 131, 213, 351, 378, 408
FatI CATG 4 cut(s) 45, 129, 349, 406
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 243, 372, 399
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 243, 372, 399
GlaI GCGC 1 cut(s) 375
GluI GCNGC 3 cut(s) 243, 372, 399
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 49, 133, 353, 410
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 3 cut(s) 4, 115, 328
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 6, 129, 279, 354
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 300, 320, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 395
Hsp92II CATG 4 cut(s) 49, 133, 353, 410
HspAI GCGC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 6 cut(s) 159, 177, 200, 232, 410, 414
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 7 cut(s) 94, 121, 180, 249, 285, 342, 408
Lsp1109I GCAGC 3 cut(s) 254, 383, 385
MaeIII GTNAC 1 cut(s) 220
MalI GATC 6 cut(s) 161, 179, 202, 234, 412, 416
MboI GATC 6 cut(s) 159, 177, 200, 232, 410, 414
MboII GAAGA 2 cut(s) 210, 338
MflI RGATCY 3 cut(s) 159, 200, 232
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 18, 40, 339
MlyI GAGTC 2 cut(s) 109, 322
MnlI CCTC 6 cut(s) 92, 160, 232, 243, 282, 354
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 251, 395
NdeII GATC 6 cut(s) 159, 177, 200, 232, 410, 414
NlaIII CATG 4 cut(s) 49, 133, 353, 410
NlaIV GGNNCC 2 cut(s) 234, 390
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 244, 373, 400
PleI GAGTC 2 cut(s) 109, 322
PpsI GAGTC 2 cut(s) 109, 322
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 234, 390
PsuI RGATCY 3 cut(s) 159, 200, 232
PvuII CAGCTG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 243, 372, 399
Sau3AI GATC 6 cut(s) 159, 177, 200, 232, 410, 414
SchI GAGTC 2 cut(s) 109, 322
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 140, 365, 383, 400
Sse9I AATT 3 cut(s) 18, 40, 339
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 413
TasI AATT 3 cut(s) 18, 40, 339
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 199
TseI GCWGC 3 cut(s) 242, 371, 398
TspDTI ATGAA 3 cut(s) 17, 62, 338
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 318
XapI RAATTY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.