pycom07g15580

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020162
Physical Location & Seq
Forward (+)
18034975 .. 18035778
804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGTATCCCATGAACTATTACGGTGTCTATGGCGGTGGTGGCCAACAATTCTCACCTTACTACACCACCACAACTGGAGGTGCATCTGGGCCAGCTGGAATTTACCAAAATGTCTACCCATTATATGCTCAATATGCTCAGAGTAGTAGCCAGGCTCATGCCCTTGGTGTCCAATATCCCCAAATGGTACAGTACCCTTATTTGCCTCAGCCCCATGGGTCCACCTCCACAGCTGGGATCCTCTCACTTCCTCCTCCTTCAATGCCAATCACCTCCTCCGCATCTACCCCAGGTGCAACAACAGCAGCAACTGGGGTCACGTCAGCGGGGGCAAATGCCTCACAACCTTCTGGGGCAAATTCTGGGCAGAGTTCTGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

128

Amino Acids

12.83

Weight (kDa)

6.68

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46780 AT2G46780
malus_domestica MD07G1159100.v1.1
pyrus_communis pycom01g11220 pycom07g15570 pycom07g15580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 33, 279, 326
AclWI GGATC 2 cut(s) 232, 245
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 99, 358
AfaI GTAC 2 cut(s) 189, 194
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 261
AjiI CACGTC 1 cut(s) 321
AjnI CCWGG 2 cut(s) 150, 289
AluBI AGCT 2 cut(s) 95, 233
AluI AGCT 2 cut(s) 95, 233
AlwI GGATC 2 cut(s) 232, 245
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 2 cut(s) 40, 89
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 2 cut(s) 99, 358
AspS9I GGNCC 2 cut(s) 89, 219
AsuHPI GGTGA 2 cut(s) 45, 262
AvaII GGWCC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 42
BamHI GGATCC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 152, 291
BciVI GTATCC 1 cut(s) 15
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 152, 291
Bme18I GGWCC 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 89, 219
BmiI GGNNCC 2 cut(s) 220, 239
BmrFI CCNGG 2 cut(s) 152, 291
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 92, 290
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 163, 214, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 79, 316
BseBI CCWGG 2 cut(s) 152, 291
BseDI CCNNGG 3 cut(s) 163, 214, 289
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 152, 221
BseNI ACTGG 2 cut(s) 79, 316
BseRI GAGGAG 2 cut(s) 243, 265
BseXI GCAGC 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 42, 91
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 2 cut(s) 42, 91
Bsp143I GATC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 3 cut(s) 33, 279, 326
BspANI GGCC 2 cut(s) 42, 91
BspCNI CTCAG 2 cut(s) 151, 220
BspLI GGNNCC 2 cut(s) 220, 239
BspPI GGATC 2 cut(s) 232, 245
BsrI ACTGG 2 cut(s) 79, 316
BssECI CCNNGG 3 cut(s) 163, 214, 289
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 163, 214
Bst2UI CCWGG 2 cut(s) 152, 291
Bst4CI ACNGT 2 cut(s) 23, 192
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 138, 207
BstDSI CCRYGG 1 cut(s) 214
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 39, 134, 302
BstNI CCWGG 2 cut(s) 152, 291
BstSCI CCNGG 2 cut(s) 150, 289
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 42, 91
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 89, 219
Csp6I GTAC 2 cut(s) 188, 193
CviAII CATG 3 cut(s) 10, 158, 215
CviJI RGCY 7 cut(s) 42, 91, 95, 150, 155, 211, 233
CviKI_1 RGCY 7 cut(s) 42, 91, 95, 150, 155, 211, 233
CviQI GTAC 2 cut(s) 188, 193
DdeI CTNAG 2 cut(s) 138, 207
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 163, 214
Eco47I GGWCC 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 150, 289
EcoT14I CCWWGG 2 cut(s) 163, 214
ErhI CCWWGG 2 cut(s) 163, 214
FaeI CATG 3 cut(s) 13, 161, 218
FaiI YATR 7 cut(s) 11, 30, 124, 126, 135, 159, 216
FatI CATG 3 cut(s) 9, 157, 214
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 42, 91
Hin1II CATG 3 cut(s) 13, 161, 218
HphI GGTGA 2 cut(s) 45, 262
Hpy166II GTNNAC 2 cut(s) 115, 222
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 2 cut(s) 115, 222
HpyAV CCTTC 2 cut(s) 267, 357
HpyCH4III ACNGT 2 cut(s) 23, 192
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 83, 296, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 134, 302
HpyF3I CTNAG 2 cut(s) 138, 207
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 13, 161, 218
Kzo9I GATC 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 2 cut(s) 92, 290
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MflI RGATCY 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 3 cut(s) 47, 99, 358
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 9 cut(s) 71, 216, 235, 251, 261, 264, 283, 286, 349
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 3 cut(s) 95, 233, 326
MspR9I CCNGG 2 cut(s) 152, 291
MvaI CCWGG 2 cut(s) 152, 291
MwoI GCNNNNNNNGC 3 cut(s) 39, 134, 302
NcoI CCATGG 1 cut(s) 214
NdeII GATC 1 cut(s) 237
NlaIII CATG 3 cut(s) 13, 161, 218
NlaIV GGNNCC 2 cut(s) 220, 239
NmuCI GTSAC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 150, 289
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 150, 289
PspN4I GGNNCC 2 cut(s) 220, 239
PspPI GGNCC 2 cut(s) 89, 219
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 2 cut(s) 95, 233
RsaI GTAC 2 cut(s) 189, 194
RsaNI GTAC 2 cut(s) 188, 193
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 2 cut(s) 89, 219
ScrFI CCNGG 2 cut(s) 152, 291
SetI ASST 9 cut(s) 58, 82, 97, 227, 235, 275, 295, 323, 349
SfaNI GCATC 2 cut(s) 92, 290
SinI GGWCC 1 cut(s) 219
Sse9I AATT 3 cut(s) 47, 99, 358
SsiI CCGC 3 cut(s) 33, 279, 326
StyD4I CCNGG 2 cut(s) 150, 289
StyI CCWWGG 2 cut(s) 163, 214
TaaI ACNGT 2 cut(s) 23, 192
TaiI ACGT 1 cut(s) 323
TasI AATT 3 cut(s) 47, 99, 358
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 2 cut(s) 99, 358
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.