pycom07g17650

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020438
Physical Location & Seq
Forward (+)
20165940 .. 20166516
577 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17650.1

Sequence Viewer

Length: 363 bp
ATGAAAACTAAAAACCAAAACCAAGAGTTTGGATGGCTGGATGAAAAGGTGTTGCAAGAAATCTGTCAGCATTTTAAGCCAAAGAAATTTAAGAAGAATGATATCATTATTGAACGGGGTGAACCACGCAAAATGATGGTCTTCATTGTGGATGGACTTGTACGCATTGAAAAGAGAAATTCAGATGATACTTGTAATGATCAGCCACGAGGTGCAGGAGATTTATGTGGAGAAGCTCTTGTTGGAAGTATATTTCGAGATCAGCACGACACAAGTTTGTTAGCTTTAGAGTCCGTTAAGGCGATTGGTGATGTTGAAGCCCTTGTTATCATGGCTGAAGACTTGAGTAATATTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

121

Amino Acids

13.62

Weight (kDa)

5.41

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 28 - 117 5.6e-08 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020438)

Species Orthologous Gene IDs
pyrus_communis pycom07g17650
rosa_laevigata RLG00000027484
rosa_multiflora Rmu_sc0001342.1_g000002 Rmu_sc0009489.1_g000010
rosa_roxburghii Rroxscaffold_4G00291680
rosa_rugosa Rorug01G0315900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 86, 178
AcuI CTGAAG 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 3 cut(s) 113, 170, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 236, 284
AluI AGCT 2 cut(s) 236, 284
ApoI RAATTY 2 cut(s) 86, 178
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AsuHPI GGTGA 2 cut(s) 131, 320
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 133, 345
BccI CCATC 3 cut(s) 27, 130, 146
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 133, 345
BseGI GGATG 3 cut(s) 38, 46, 157
BsgI GTGCAG 1 cut(s) 234
Bsp143I GATC 2 cut(s) 199, 259
BssMI GATC 2 cut(s) 199, 259
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 38, 46, 157
BstKTI GATC 2 cut(s) 202, 262
BstMBI GATC 2 cut(s) 199, 259
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV2I GAAGAC 2 cut(s) 133, 345
BstXI CCANNNNNNTGG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 38, 46, 157
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 331
CviJI RGCY 7 cut(s) 37, 79, 205, 236, 284, 320, 335
CviKI_1 RGCY 7 cut(s) 37, 79, 205, 236, 284, 320, 335
CviQI GTAC 1 cut(s) 161
DpnI GATC 2 cut(s) 201, 261
DpnII GATC 2 cut(s) 199, 259
DraIII CACNNNGTG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 357
EcoRV GATATC 1 cut(s) 103
FaeI CATG 1 cut(s) 334
FaiI YATR 3 cut(s) 226, 251, 332
FatI CATG 1 cut(s) 330
FbaI TGATCA 1 cut(s) 199
FokI GGATG 3 cut(s) 45, 53, 164
FspBI CTAG 1 cut(s) 361
Hin1II CATG 1 cut(s) 334
HinfI GANTC 1 cut(s) 290
HphI GGTGA 2 cut(s) 131, 320
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 55, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 199, 259
LpnPI CCDG 2 cut(s) 23, 201
MaeI CTAG 1 cut(s) 361
MalI GATC 2 cut(s) 201, 261
MboI GATC 2 cut(s) 199, 259
MboII GAAGA 3 cut(s) 106, 133, 350
MluCI AATT 2 cut(s) 86, 178
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 203
MseI TTAA 4 cut(s) 75, 90, 297, 354
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 199, 259
NlaIII CATG 1 cut(s) 334
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 4 cut(s) 75, 90, 297, 354
Sau3AI GATC 2 cut(s) 199, 259
SchI GAGTC 1 cut(s) 299
SetI ASST 4 cut(s) 51, 214, 238, 286
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 2 cut(s) 86, 178
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 361
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 86, 178
Tru1I TTAA 4 cut(s) 75, 90, 297, 354
Tru9I TTAA 4 cut(s) 75, 90, 297, 354
TspDTI ATGAA 3 cut(s) 17, 57, 133
TspGWI ACGGA 1 cut(s) 283
XapI RAATTY 2 cut(s) 86, 178
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.