RLG00000027484

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020438
Physical Location & Seq
Forward (+)
12095065 .. 12096959
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027484

Sequence Viewer

Length: 528 bp
ATGCTCTTTATCGTGGATGGAGTTGTACGCATTGAAAAGAGAGATTGTTCTAGTAATTTGCAACGAGATGTAGGAGAATTATGTGGAGGGAAACTTCTTGCTTGGCCAACAGCTGAGTCTGCTAGGGCAATGGGTGTTGCTGTAGCCCTTGTTCTAATGGCCAGTGATATGGAGAGACTGGGCATTAATTTTGCAACGCACTTCAAAGGATATTGCAACTCCAGAAGTCGGTTGTATATTCATCCACAAAATGTTGGGGCAGCAATCTTTACTGAAGAGTACCTAAAGAAGGCTATACAAATTACCATGAATGTAGAGTACTTGGCACAAAGAGCGACTTCTCACGCCACTGACGCCGCCATCGATGAGCGACCGCAATTCAACCCGCCCAGATTTTTGGGTTTCTCCTTACACGACAACGGCGACAAAGCCTTAGATGATGGCGACCCAGGGCTCGACGATGGAGAAGCCGGTGGTGATGGTCGCGAAGTCGCCGAGGAGGCCGTTGCAGTGGCCAGAGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

176

Amino Acids

18.96

Weight (kDa)

4.97

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020438)

Species Orthologous Gene IDs
pyrus_communis pycom07g17650
rosa_laevigata RLG00000027484
rosa_multiflora Rmu_sc0001342.1_g000002 Rmu_sc0009489.1_g000010
rosa_roxburghii Rroxscaffold_4G00291680
rosa_rugosa Rorug01G0315900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 486
AciI CCGC 3 cut(s) 357, 374, 386
AcoI YGGCCR 3 cut(s) 104, 159, 513
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 27, 281, 320
AfiI CCNNNNNNNGG 2 cut(s) 228, 289
AgsI TTSAA 3 cut(s) 35, 205, 382
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 4 cut(s) 104, 159, 501, 513
ApeKI GCWGC 1 cut(s) 260
AseI ATTAAT 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 488
BalI TGGCCA 3 cut(s) 106, 161, 515
BanII GRGCYC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 272
BccI CCATC 5 cut(s) 11, 368, 434, 455, 473
BceAI ACGGC 2 cut(s) 436, 488
BciT130I CCWGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 51, 123
BfmI CTRYAG 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 500
BisI GCNGC 2 cut(s) 261, 357
BlsI GCNGC 2 cut(s) 262, 358
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 205
Bsa29I ATCGAT 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 448, 449, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 289
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 162, 183
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 448, 449, 495
BseGI GGATG 2 cut(s) 22, 241
BseLI CCNNNNNNNGG 2 cut(s) 228, 289
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 162, 183
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 4 cut(s) 106, 161, 503, 515
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 374
BsiSI CCGG 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 228, 289
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 4 cut(s) 106, 161, 503, 515
Bsp1286I GDGCHC 1 cut(s) 456
Bsp68I TCGCGA 1 cut(s) 486
BspACI CCGC 3 cut(s) 357, 374, 386
BspANI GGCC 4 cut(s) 106, 161, 503, 515
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 2 cut(s) 162, 183
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 448, 449, 495
BssNI GRCGYC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 114, 433
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 22, 241
BstFNI CGCG 1 cut(s) 486
BstMAI GTCTC 1 cut(s) 169
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 4 cut(s) 119, 332, 353, 500
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 272
BstXI CCANNNNNNTGG 2 cut(s) 169, 397
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 4 cut(s) 106, 161, 503, 515
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 2 cut(s) 22, 241
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 169, 348, 516
BtuMI TCGCGA 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 26, 280, 319
CviAII CATG 1 cut(s) 307
CviQI GTAC 3 cut(s) 26, 280, 319
DdeI CTNAG 2 cut(s) 114, 433
EaeI YGGCCR 3 cut(s) 104, 159, 513
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 82, 170, 237, 296, 308
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 1 cut(s) 306
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 261, 357
FokI GGATG 2 cut(s) 29, 228
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 2 cut(s) 261, 357
FspBI CTAG 2 cut(s) 51, 123
GluI GCNGC 2 cut(s) 261, 357
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 4 cut(s) 106, 161, 503, 515
HapII CCGG 1 cut(s) 471
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 310
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 471
HphI GGTGA 1 cut(s) 488
Hpy188III TCNNGA 2 cut(s) 222, 485
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 61, 194, 216, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 332, 353, 500
HpyF3I CTNAG 2 cut(s) 114, 433
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 310
LpnPI CCDG 7 cut(s) 164, 175, 235, 403, 435, 462, 484
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 2 cut(s) 51, 123
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 456
MlsI TGGCCA 3 cut(s) 106, 161, 515
MluCI AATT 5 cut(s) 55, 77, 187, 300, 377
MluNI TGGCCA 3 cut(s) 106, 161, 515
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 80, 490, 493
Mox20I TGGCCA 3 cut(s) 106, 161, 515
MscI TGGCCA 3 cut(s) 106, 161, 515
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 3 cut(s) 106, 161, 515
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 4 cut(s) 119, 332, 353, 500
NlaIII CATG 1 cut(s) 310
NmeAIII GCCGAG 1 cut(s) 520
NruI TCGCGA 1 cut(s) 486
PasI CCCWGGG 1 cut(s) 449
PcsI WCGNNNNNNNCGW 2 cut(s) 360, 420
PkrI GCNGC 2 cut(s) 262, 358
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
PvuII CAGCTG 1 cut(s) 113
RruI TCGCGA 1 cut(s) 486
RsaI GTAC 3 cut(s) 27, 281, 320
RsaNI GTAC 3 cut(s) 26, 280, 319
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 261, 357
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 456
SetI ASST 2 cut(s) 115, 285
SfcI CTRYAG 1 cut(s) 141
Sse9I AATT 5 cut(s) 55, 77, 187, 300, 377
SsiI CCGC 3 cut(s) 357, 374, 386
SspMI CTAG 2 cut(s) 51, 123
StyD4I CCNGG 1 cut(s) 448
TaqI TCGA 2 cut(s) 363, 456
TasI AATT 5 cut(s) 55, 77, 187, 300, 377
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 3 cut(s) 169, 355, 516
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 230, 323
TspRI CASTG 3 cut(s) 169, 355, 516
VspI ATTAAT 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 51, 123
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.