Rroxscaffold_4G00291680

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020438
Physical Location & Seq
Reverse (-)
12047197 .. 12051317
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291680.1

Sequence Viewer

Length: 402 bp
ATGATATTCATCGTTGACGGAGTTGCAAGTATTGAAAAGAGTTATTGTCCTACTCGTTGGGAGCTAAAAGCAGGAGAATTCTATGGGGAACAGCTCCTACAATCGCCATCGGCCCAAGCAACCGAGTCCATTCGAGCCAAAACCGATGTTCAAGCCCGATTCTTGAGGCCGAAACCTAAACCGAGGAGAGTATTGTACAAGGTTGGAGAACTCTACGGAGAGGAACTTCTGCAATGGGCATTGGTTACGCGAACCACGTCTCCTTTCCCCTTATCGCCCGGTACTGCTACGACCGACAACAAAGTTGACGTCCTCATTTTCAAAGCCACGGATTTGGAGAAGAAGATGAAGGATTTAGCTGCTACAGAATCACCACCCCCCACTGTTTCTGAGTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1682 NopRA1 cNMP_binding iPGM_N

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

6.35

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020438)

Species Orthologous Gene IDs
pyrus_communis pycom07g17650
rosa_laevigata RLG00000027484
rosa_multiflora Rmu_sc0001342.1_g000002 Rmu_sc0009489.1_g000010
rosa_roxburghii Rroxscaffold_4G00291680
rosa_rugosa Rorug01G0315900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccII CGCG 1 cut(s) 250
AcsI RAATTY 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 197, 283
AgsI TTSAA 3 cut(s) 35, 152, 322
AjiI CACGTC 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 3 cut(s) 64, 94, 359
AluI AGCT 3 cut(s) 64, 94, 359
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 2 cut(s) 111, 167
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 363
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 279
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 182, 327
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bse3DI GCAATG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 182, 327
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 250
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 113, 169
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 113, 169
Bsp1407I TGTACA 1 cut(s) 195
BspANI GGCC 2 cut(s) 113, 169
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 182, 327
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuRI GGCC 2 cut(s) 113, 169
BtgI CCRYGG 1 cut(s) 327
BtrI CACGTC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 196, 282
CviJI RGCY 8 cut(s) 64, 94, 113, 137, 155, 169, 326, 359
CviKI_1 RGCY 8 cut(s) 64, 94, 113, 137, 155, 169, 326, 359
CviQI GTAC 2 cut(s) 196, 282
DdeI CTNAG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 264
FaiI YATR 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 2 cut(s) 113, 169
HapII CCGG 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 309
HincII GTYRAC 2 cut(s) 16, 307
HindII GTYRAC 2 cut(s) 16, 307
HinfI GANTC 4 cut(s) 125, 159, 368, 392
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 2 cut(s) 16, 307
Hpy188I TCNGA 2 cut(s) 391, 397
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 2 cut(s) 16, 307
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 257, 309
HpyCH4V TGCA 2 cut(s) 26, 232
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 257, 309
Hsp92I GRCGYC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 61, 99
LpnPI CCDG 2 cut(s) 57, 292
Lsp1109I GCAGC 1 cut(s) 346
MaeII ACGT 2 cut(s) 257, 309
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 2 cut(s) 352, 355
MluCI AATT 1 cut(s) 77
MlyI GAGTC 2 cut(s) 134, 401
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 4 cut(s) 159, 177, 214, 323
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 250
NciI CCSGG 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PfeI GAWTC 2 cut(s) 159, 368
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 2 cut(s) 133, 400
PpsI GAGTC 2 cut(s) 133, 400
PspPI GGNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
RsaI GTAC 2 cut(s) 197, 283
RsaNI GTAC 2 cut(s) 196, 282
SatI GCNGC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 134, 401
ScrFI CCNGG 1 cut(s) 279
SetI ASST 7 cut(s) 66, 96, 178, 204, 260, 312, 361
SfcI CTRYAG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 260, 312
TaqI TCGA 1 cut(s) 133
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 159, 368
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 3 cut(s) 33, 231, 344
TspRI CASTG 1 cut(s) 388
XapI RAATTY 1 cut(s) 77
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.