Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0021860

Physical Location & Seq

Genomic Coordinates Forward (+)

20978718 .. 20980277

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAGAAGCTGAGGACATTCAGCCACTCGTGTGTGATAATGGAACGGGAATGGTCAAGGCTGGATTTGCCGGAGATGATGCTCCACGAGCTGTGTTCCCTAGCATTGTAGGCCGCCCTCGTCACACTGGTGTCATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAGTCCAAACGTGGTATTTTAACTTTGAAATACCCTATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTTCTAACTGAGGCACCTCTGAATCCTAAGGCCAATCGTGAGAAGATGACCCAAATAATGTTTGAGACCTTTAACACTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTGTCCCTGTATGCAAGTGGTCGTACAACCGGTATTGTACTTGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATTTACGAGGGGTATGCCCTCCCCCATGCCATCCTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATCACTTGATGAAAATTCTTACGGAGCGTGGATATTCCTTCACTACCACTGCTGAGCGTGAAATTGTTAGAGACATGAAGGAAAAACTCTCTTACATTGCCCTTGACTATGAGCAGGAGATGGAGACTTCCAAAACCAGCTCTACAGTTGAGAAGAGTTACGAATTGCCAGATGGGCAGGTCATTACCATTGGTGCAGAGCGGTTCCGATGCCCAGAAGTCCTTTTCCAACCATCAATGATTGGAATGGAAGCAGCAGGCATTCACGAAACCACTTATAACTCCATCATGAAGTGCGATGTCGATATCAGGAAAGACCTGTACGGAAACATTGTACTCTCTGGTGGTTCGACCATGTTTCCAGGCATTGCTGATAGAATGAGCAGGGAAATTACTGCCCTTGCCCCAAGCAGTATGAGATCGAGCGTAGAAGTGGTGGCACCACCCGAGAGGAAATACAGTGTCTGGATCGGAGGCTCAATCTTGGCTTCCCTTAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGATGAGTCTGGGCCATCTATTGTTCATAGGAAATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0030054 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

380

Amino Acids

42.03

Weight (kDa)

5.23

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 379	5.9e-144	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021860)

Species	Orthologous Gene IDs
malus_domestica	MD01G1133700.v1.1 MD07G1198000.v1.1
pyrus_communis	pycom01g15450 pycom07g18520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	2 cut(s)	328, 1003
AccBSI	CCGCTC	1 cut(s)	766
AciI	CCGC	2 cut(s)	115, 766
AclWI	GGATC	1 cut(s)	1040
AcsI	RAATTY	1 cut(s)	579
AfaI	GTAC	6 cut(s)	448, 462, 887, 900, 1063, 1097
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	208, 416
AjnI	CCWGG	1 cut(s)	925
AleI	CACNNNNGTG	2 cut(s)	31, 129
AluBI	AGCT	5 cut(s)	11, 92, 286, 419, 705
AluI	AGCT	5 cut(s)	11, 92, 286, 419, 705
Alw26I	GTCTC	3 cut(s)	374, 630, 683
AlwI	GGATC	1 cut(s)	1040
AlwNI	CAGNNNCTG	2 cut(s)	11, 1029
Ama87I	CYCGRG	1 cut(s)	1010
AoxI	GGCC	4 cut(s)	112, 148, 345, 1109
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	1 cut(s)	579
AsiGI	ACCGGT	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	148, 1109
AsuHPI	GGTGA	2 cut(s)	182, 485
AvaI	CYCGRG	1 cut(s)	1010
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	2 cut(s)	328, 1003
BauI	CACGAG	2 cut(s)	29, 87
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	7 cut(s)	470, 536, 679, 731, 805, 857, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	1 cut(s)	927
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	3 cut(s)	374, 630, 683
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	739
BisI	GCNGC	2 cut(s)	115, 819
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	2 cut(s)	116, 820
Bme1390I	CCNGG	1 cut(s)	927
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	148, 1109
BmiI	GGNNCC	3 cut(s)	330, 770, 1005
BmrFI	CCNGG	1 cut(s)	927
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	5 cut(s)	70, 148, 274, 316, 764
BmuI	ACTGGG	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	452
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	133, 245, 311
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	660, 930
BseBI	CCWGG	1 cut(s)	927
BseGI	GGATG	3 cut(s)	250, 307, 528
BseMI	GCAATG	2 cut(s)	660, 930
BseMII	CTCAG	3 cut(s)	194, 315, 609
BseNI	ACTGG	3 cut(s)	133, 245, 311
BseXI	GCAGC	1 cut(s)	830
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	4 cut(s)	114, 150, 347, 1111
BshNI	GGYRCC	2 cut(s)	328, 1003
BshTI	ACCGGT	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	1010
BsiSI	CCGG	2 cut(s)	72, 453
BslFI	GGGAC	2 cut(s)	412, 479
BsmAI	GTCTC	3 cut(s)	374, 630, 683
BsmFI	GGGAC	2 cut(s)	412, 479
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	4 cut(s)	114, 150, 347, 1111
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	1010
Bsp143I	GATC	3 cut(s)	565, 983, 1032
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	2 cut(s)	115, 766
BspANI	GGCC	4 cut(s)	114, 150, 347, 1111
BspCNI	CTCAG	4 cut(s)	4, 193, 316, 610
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	330, 770, 1005
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	1040
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	328, 1003
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	766
BsrDI	GCAATG	2 cut(s)	660, 930
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	133, 245, 311
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	3 cut(s)	565, 983, 1032
BssSI	CACGAG	2 cut(s)	29, 87
Bst2BI	CACGAG	2 cut(s)	29, 87
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	3 cut(s)	493, 712, 1025
Bst6I	CTCTTC	2 cut(s)	297, 713
BstC8I	GCNNGC	1 cut(s)	823
BstDEI	CTNAG	6 cut(s)	12, 180, 324, 342, 618, 1058
BstF5I	GGATG	3 cut(s)	250, 307, 528
BstKTI	GATC	3 cut(s)	568, 986, 1035
BstMAI	GTCTC	3 cut(s)	374, 630, 683
BstMBI	GATC	3 cut(s)	565, 983, 1032
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 89, 111, 416, 739
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	925
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	1 cut(s)	830
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	114, 150, 347, 1111
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	3 cut(s)	250, 307, 528
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	126, 561, 612, 1030
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	1 cut(s)	823
CaiI	CAGNNNCTG	2 cut(s)	11, 1029
CciI	TCATGA	1 cut(s)	852
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	148, 1109
Csp6I	GTAC	6 cut(s)	447, 461, 886, 899, 1062, 1096
CspAI	ACCGGT	1 cut(s)	452
CviAII	CATG	8 cut(s)	136, 145, 224, 250, 524, 640, 853, 919
CviQI	GTAC	6 cut(s)	447, 461, 886, 899, 1062, 1096
DdeI	CTNAG	6 cut(s)	12, 180, 324, 342, 618, 1058
DpnI	GATC	3 cut(s)	567, 985, 1034
DpnII	GATC	3 cut(s)	565, 983, 1032
Eam1104I	CTCTTC	2 cut(s)	297, 713
EarI	CTCTTC	2 cut(s)	297, 713
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	871
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	1010
EcoRII	CCWGG	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	871
FaeI	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
FaqI	GGGAC	2 cut(s)	412, 479
FatI	CATG	8 cut(s)	135, 144, 223, 249, 523, 639, 852, 918
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	115, 819
FokI	GGATG	3 cut(s)	257, 294, 515
Fsp4HI	GCNGC	2 cut(s)	115, 819
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	115, 819
HaeIII	GGCC	4 cut(s)	114, 150, 347, 1111
HapII	CCGG	2 cut(s)	72, 453
Hin1II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
HinfI	GANTC	3 cut(s)	337, 467, 1103
HpaII	CCGG	2 cut(s)	72, 453
HphI	GGTGA	2 cut(s)	182, 485
Hpy188I	TCNGA	3 cut(s)	336, 773, 1037
Hpy188III	TCNNGA	7 cut(s)	353, 539, 554, 830, 853, 874, 1030
HpyAV	CCTTC	5 cut(s)	283, 542, 613, 637, 1075
HpyCH4III	ACNGT	3 cut(s)	493, 712, 1025
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	437, 761, 1085
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 89, 111, 416, 739
HpyF3I	CTNAG	6 cut(s)	12, 180, 324, 342, 618, 1058
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	565, 983, 1032
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	88, 589
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	5 cut(s)	70, 148, 274, 316, 764
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	122, 554, 722
MalI	GATC	3 cut(s)	567, 985, 1034
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	3 cut(s)	565, 983, 1032
MboII	GAAGA	5 cut(s)	268, 308, 314, 370, 730
MluCI	AATT	4 cut(s)	579, 627, 728, 954
MlyI	GAGTC	2 cut(s)	461, 1112
MmeI	TCCRAC	1 cut(s)	817
MseI	TTAA	3 cut(s)	200, 387, 1138
MslI	CAYNNNNRTG	2 cut(s)	31, 129
MspI	CCGG	2 cut(s)	72, 453
MspR9I	CCNGG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	5 cut(s)	68, 89, 111, 416, 739
NdeII	GATC	3 cut(s)	565, 983, 1032
NlaIII	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
NlaIV	GGNNCC	3 cut(s)	330, 770, 1005
NmuCI	GTSAC	2 cut(s)	122, 554
OliI	CACNNNNGTG	2 cut(s)	31, 129
PagI	TCATGA	1 cut(s)	852
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	116, 820
PleI	GAGTC	2 cut(s)	461, 1111
PpsI	GAGTC	2 cut(s)	461, 1111
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	330, 770, 1005
PspPI	GGNCC	2 cut(s)	148, 1109
PstNI	CAGNNNCTG	2 cut(s)	11, 1029
RsaI	GTAC	6 cut(s)	448, 462, 887, 900, 1063, 1097
RsaNI	GTAC	6 cut(s)	447, 461, 886, 899, 1062, 1096
RseI	CAYNNNNRTG	2 cut(s)	31, 129
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	200, 387, 1138
SatI	GCNGC	2 cut(s)	115, 819
Sau3AI	GATC	3 cut(s)	565, 983, 1032
Sau96I	GGNCC	2 cut(s)	148, 1109
SchI	GAGTC	2 cut(s)	461, 1112
ScrFI	CCNGG	1 cut(s)	927
SfaNI	GCATC	5 cut(s)	70, 148, 274, 316, 764
SfcI	CTRYAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	2 cut(s)	31, 129
Sse9I	AATT	4 cut(s)	579, 627, 728, 954
SsiI	CCGC	2 cut(s)	115, 766
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	925
TaaI	ACNGT	3 cut(s)	493, 712, 1025
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	867, 914, 986
TasI	AATT	4 cut(s)	579, 627, 728, 954
TatI	WGTACW	2 cut(s)	460, 898
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	3 cut(s)	200, 387, 1138
Tru9I	TTAA	3 cut(s)	200, 387, 1138
TscAI	CASTG	4 cut(s)	133, 568, 619, 1030
TseFI	GTSAC	2 cut(s)	122, 554
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	2 cut(s)	122, 554
TspDTI	ATGAA	4 cut(s)	590, 656, 869, 1112
TspGWI	ACGGA	2 cut(s)	602, 903
TspRI	CASTG	4 cut(s)	133, 568, 619, 1030
XapI	RAATTY	1 cut(s)	579
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.