Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0017405

Physical Location & Seq

Genomic Coordinates Reverse (-)

429823 .. 431898

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGGAAAGTACAACCGCTATGATGGAATTTCGTTGTCATGGGATGAACGTGCTGTCACATCTTGTACCGGTGGATTGGGTAATCGAAGCACTGGGGACAATTTCCATGGGGTTCCGAATATTGATCGATAGCCAACTTTTTGTTCGAAAAGATATTACAGGATGGCTGCAGTGGCTACGTAATAATGTTGGTTTTCAGGATTTCCGATTTGATTTTGCAAGGGGTTATTCGGCAAAATATGTGAAAGAATACATTGAAGGAGCAAAACCAATTTTTTCTGTTGGGGAGTATTGGGATTCTTGCAACTACAACGGTCATGGCCTAGATTACAACCAAGATAGCCACAGACAGCGGATAGTAAACTGGATCAACGGCACAGGACAGCTATCAACTGCGTTTGACTTTACAACCAAGGGAATTCTTCAGGAAGCGGTTAAAGGACAATTGTGGCGCCTGCGTGACCCCCAAGGGAAGCCACCAGGTGTAGTTGGATGGTGGCCTTCTCGATCTGTCACCTTCCTAGATAACCATGATACAGGCTCAACGCAGGCTCATTGGCCCTTCCCTTCAAATCATGTCATGGAGGGTTACACATACATACTCACGCACCCAGGAATACCAACAGTTTTCTACGATCATTTCTATGATTGGGGTGATTCCATTCATCGATCAGATTGTGAAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

231

Amino Acids

26.55

Weight (kDa)

5.76

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017405)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g00450
rosa_chinensis	RchiOBHm_Chr1g0327581 RchiOBHm_Chr2g0111851 RchiOBHm_Chr3g0496411 RchiOBHm_Chr3g0496421 RchiOBHm_Chr6g0270761 RchiOBHm_Chr7g0227001 RchiOBHm_Chr7g0227031
rosa_roxburghii	Rroxscaffold_5G00354860 Rroxscaffold_6G00392060 Rroxscaffold_7G00194530
rosa_samantha	Rh2BG231900 Rh7CG448800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AciI	CCGC	3 cut(s)	18, 355, 434
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	29, 420
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	454
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	13, 69
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	260, 573
AjnI	CCWGG	2 cut(s)	481, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	3 cut(s)	322, 500, 560
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	2 cut(s)	29, 420
AsiGI	ACCGGT	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	508, 668
AsuII	TTCGAA	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	19, 159, 489
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	483, 615
BfaI	CTAG	2 cut(s)	326, 524
BfmI	CTRYAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	457
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	483, 615
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	2 cut(s)	116, 455
BmrFI	CCNGG	2 cut(s)	483, 615
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	148
Bsa29I	ATCGAT	2 cut(s)	129, 670
BsaAI	YACGTR	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	454
BsaJI	CCNNGG	4 cut(s)	108, 414, 469, 613
BsaWI	WCCGGW	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	99, 371
BseBI	CCWGG	2 cut(s)	483, 615
BseCI	ATCGAT	2 cut(s)	129, 670
BseDI	CCNNGG	4 cut(s)	108, 414, 469, 613
BseGI	GGATG	3 cut(s)	51, 170, 500
BseNI	ACTGG	2 cut(s)	99, 371
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	3 cut(s)	324, 502, 562
BshNI	GGYRCC	1 cut(s)	453
BshTI	ACCGGT	1 cut(s)	70
BshVI	ATCGAT	2 cut(s)	129, 670
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	324, 502, 562
Bsp119I	TTCGAA	1 cut(s)	148
Bsp143I	GATC	5 cut(s)	126, 369, 509, 637, 671
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	18, 355, 434
BspANI	GGCC	3 cut(s)	324, 502, 562
BspDI	ATCGAT	2 cut(s)	129, 670
BspLI	GGNNCC	2 cut(s)	116, 455
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	99, 371
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	108, 414, 469, 613
BssMI	GATC	5 cut(s)	126, 369, 509, 637, 671
BssNI	GRCGYC	1 cut(s)	454
BssT1I	CCWWGG	3 cut(s)	108, 414, 469
Bst2UI	CCWGG	2 cut(s)	483, 615
Bst4CI	ACNGT	2 cut(s)	317, 628
BstACI	GRCGYC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	458, 552
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	51, 170, 500
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	5 cut(s)	129, 372, 512, 640, 674
BstMBI	GATC	5 cut(s)	126, 369, 509, 637, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	2 cut(s)	483, 615
BstSCI	CCNGG	2 cut(s)	481, 613
BstSFI	CTRYAG	1 cut(s)	170
BstSNI	TACGTA	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	156
Bsu15I	ATCGAT	2 cut(s)	129, 670
BsuRI	GGCC	3 cut(s)	324, 502, 562
BsuTUI	ATCGAT	2 cut(s)	129, 670
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	51, 170, 500
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	92, 179
Cac8I	GCNNGC	2 cut(s)	458, 552
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	561
ClaI	ATCGAT	2 cut(s)	129, 670
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	12, 68
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	6 cut(s)	41, 109, 320, 533, 578, 583
CviQI	GTAC	2 cut(s)	12, 68
DinI	GGCGCC	1 cut(s)	455
DpnI	GATC	5 cut(s)	128, 371, 511, 639, 673
DpnII	GATC	5 cut(s)	126, 369, 509, 637, 671
DraIII	CACNNNGTG	1 cut(s)	485
Eco105I	TACGTA	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	108, 414, 469
Eco57I	CTGAAG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	481, 613
EcoT14I	CCWWGG	3 cut(s)	108, 414, 469
EgeI	GGCGCC	1 cut(s)	455
EheI	GGCGCC	1 cut(s)	455
ErhI	CCWWGG	3 cut(s)	108, 414, 469
FaeI	CATG	6 cut(s)	44, 112, 323, 536, 581, 586
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	40, 108, 319, 532, 577, 582
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	3 cut(s)	58, 177, 507
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	2 cut(s)	326, 524
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	324, 502, 562
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	456
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	6 cut(s)	44, 112, 323, 536, 581, 586
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	299, 659
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	508, 668
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	119, 209, 676
Hpy188III	TCNNGA	3 cut(s)	200, 428, 507
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	5 cut(s)	254, 513, 529, 574, 579
HpyCH4III	ACNGT	2 cut(s)	317, 628
HpyCH4IV	ACGT	2 cut(s)	51, 181
HpyCH4V	TGCA	3 cut(s)	172, 221, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	2 cut(s)	51, 181
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	6 cut(s)	44, 112, 323, 536, 581, 586
HspAI	GCGC	1 cut(s)	454
KasI	GGCGCC	1 cut(s)	453
Kzo9I	GATC	5 cut(s)	126, 369, 509, 637, 671
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	1 cut(s)	156
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	326, 524
MaeII	ACGT	2 cut(s)	51, 181
MaeIII	GTNAC	4 cut(s)	57, 461, 514, 590
MalI	GATC	5 cut(s)	128, 371, 511, 639, 673
MboI	GATC	5 cut(s)	126, 369, 509, 637, 671
MboII	GAAGA	1 cut(s)	416
MfeI	CAATTG	1 cut(s)	446
MluCI	AATT	5 cut(s)	29, 102, 273, 420, 446
Mly113I	GGCGCC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	1 cut(s)	580
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	483, 615
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	483, 615
MwoI	GCNNNNNNNGC	1 cut(s)	175
NarI	GGCGCC	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	5 cut(s)	126, 369, 509, 637, 671
NlaIII	CATG	6 cut(s)	44, 112, 323, 536, 581, 586
NlaIV	GGNNCC	2 cut(s)	116, 455
NmuCI	GTSAC	3 cut(s)	57, 461, 514
NspV	TTCGAA	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	299, 659
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	481, 613
PspGI	CCWGG	2 cut(s)	481, 613
PspN4I	GGNNCC	2 cut(s)	116, 455
PspPI	GGNCC	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	174
RsaI	GTAC	2 cut(s)	13, 69
RsaNI	GTAC	2 cut(s)	12, 68
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	5 cut(s)	126, 369, 509, 637, 671
Sau96I	GGNCC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	483, 615
SetI	ASST	5 cut(s)	54, 184, 390, 487, 521
SexAI	ACCWGGT	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	170
SfoI	GGCGCC	1 cut(s)	455
SfuI	TTCGAA	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	182
Sse9I	AATT	5 cut(s)	29, 102, 273, 420, 446
SsiI	CCGC	3 cut(s)	18, 355, 434
SspDI	GGCGCC	1 cut(s)	453
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	2 cut(s)	326, 524
StyD4I	CCNGG	2 cut(s)	481, 613
StyI	CCWWGG	3 cut(s)	108, 414, 469
TaaI	ACNGT	2 cut(s)	317, 628
TaiI	ACGT	2 cut(s)	54, 184
TaqI	TCGA	5 cut(s)	87, 129, 148, 508, 670
TasI	AATT	5 cut(s)	29, 102, 273, 420, 446
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	299, 659
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	99, 179
TseFI	GTSAC	3 cut(s)	57, 461, 514
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	3 cut(s)	57, 461, 514
TspDTI	ATGAA	2 cut(s)	62, 656
TspRI	CASTG	2 cut(s)	99, 179
XapI	RAATTY	2 cut(s)	29, 420
XspI	CTAG	2 cut(s)	326, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.