Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017405

Physical Location & Seq

Genomic Coordinates Forward (+)

23577789 .. 23579024

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACCGGATCATCGTGTCCGCTTTGCTTTCCTCATATTGTAGGTTATCTCCCTCAAAACATATATTCCCTCAATTCTAAATATGGATCTGAGCACCAATTAAAAGGTTTACTTCAAAAAATTGGGTTACCTCCCTCAGAACATATATTCCATCAAATTGGGTTAATTTATTTACAGCTTACTCTGTCTCGTGTTTTCGAATATTCAATTAGTTATGCAGCAAAATATGTGAAAGAGTATATTGAAGGAGCAAACCAATTTTTTCCGTTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGCTTGAATTTAGTAGTAATAATGACAAGTGCTTATGTTGTTTACGTGGACTCCATTTGTGCAGATACCACAGACAACGAATACTAAGTTGGATTGATGGCACAGGACAGCTGTCAACTGTATTTGACTTCACAACCAAGGGAGTTCTTCAGGAAGCTGTCAAGGGAAAATTATGGAGATTACGTGATCCCCAAGGGAAGCCACCAGTTGTAATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

180

Amino Acids

20.39

Weight (kDa)

9.15

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017405)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g00450
rosa_chinensis	RchiOBHm_Chr1g0327581 RchiOBHm_Chr2g0111851 RchiOBHm_Chr3g0496411 RchiOBHm_Chr3g0496421 RchiOBHm_Chr6g0270761 RchiOBHm_Chr7g0227001 RchiOBHm_Chr7g0227031
rosa_roxburghii	Rroxscaffold_5G00354860 Rroxscaffold_6G00392060 Rroxscaffold_7G00194530
rosa_samantha	Rh2BG231900 Rh7CG448800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	16, 94, 503
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	116, 207, 245, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	4 cut(s)	178, 325, 433, 479
AluI	AGCT	4 cut(s)	178, 325, 433, 479
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	16, 94, 503
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	198
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	159, 413
BcoDI	GTCTC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	433
Bpu14I	TTCGAA	1 cut(s)	198
BsaAI	YACGTR	2 cut(s)	368, 506
BsaJI	CCNNGG	2 cut(s)	459, 514
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 490, 520
Bse1I	ACTGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	459, 514
BseMII	CTCAG	2 cut(s)	81, 150
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	8, 86, 508
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	82, 149
BspPI	GGATC	3 cut(s)	16, 94, 503
BspT104I	TTCGAA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	459, 514
BssMI	GATC	3 cut(s)	8, 86, 508
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	459, 514
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	442, 540
BstBAI	YACGTR	2 cut(s)	368, 506
BstBI	TTCGAA	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	90, 136, 407
BstEII	GGTNACC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	11, 89, 511
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	8, 86, 508
BstPAI	GACNNNNGTC	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	86
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	5 cut(s)	178, 325, 433, 479, 523
CviKI_1	RGCY	5 cut(s)	178, 325, 433, 479, 523
DdeI	CTNAG	3 cut(s)	90, 136, 407
DpnI	GATC	3 cut(s)	10, 88, 510
DpnII	GATC	3 cut(s)	8, 86, 508
Eco130I	CCWWGG	2 cut(s)	459, 514
Eco57I	CTGAAG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	459, 514
ErhI	CCWWGG	2 cut(s)	459, 514
FaeI	CATG	1 cut(s)	307
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	283, 372
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	4 cut(s)	110, 365, 371, 438
Hpy188I	TCNGA	2 cut(s)	91, 139
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	4 cut(s)	110, 365, 371, 438
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	442, 540
HpyCH4IV	ACGT	2 cut(s)	367, 505
HpyCH4V	TGCA	3 cut(s)	218, 290, 384
HpyF3I	CTNAG	3 cut(s)	90, 136, 407
HpySE526I	ACGT	2 cut(s)	367, 505
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	8, 86, 508
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	3 cut(s)	19, 411, 458
Lsp1109I	GCAGC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	367, 505
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	10, 88, 510
MboI	GATC	3 cut(s)	8, 86, 508
MboII	GAAGA	1 cut(s)	461
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	9 cut(s)	73, 98, 120, 156, 165, 207, 257, 329, 491
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	42, 63, 80, 141, 145
MseI	TTAA	2 cut(s)	101, 164
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	8, 86, 508
NlaIII	CATG	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Ppu21I	YACGTR	2 cut(s)	368, 506
PshAI	GACNNNNGTC	1 cut(s)	433
PspEI	GGTNACC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	101, 164
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	8, 86, 508
SchI	GAGTC	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	9 cut(s)	46, 109, 133, 180, 327, 370, 435, 481, 508
SfuI	TTCGAA	1 cut(s)	198
Sse9I	AATT	9 cut(s)	73, 98, 120, 156, 165, 207, 257, 329, 491
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	459, 514
TaaI	ACNGT	2 cut(s)	442, 540
TaiI	ACGT	2 cut(s)	370, 508
TaqI	TCGA	1 cut(s)	198
TasI	AATT	9 cut(s)	73, 98, 120, 156, 165, 207, 257, 329, 491
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	101, 164
Tru9I	TTAA	2 cut(s)	101, 164
TseI	GCWGC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	255
XapI	RAATTY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.