Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017405

Physical Location & Seq

Genomic Coordinates Forward (+)

58970136 .. 58973841

Gene Structure 3706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG448800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGGAGATCAATATTTTTGGTTTCTCAACGGATTTTAAAGGACCTATTTTGTGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCGGCATGGTTGCTGCCATCAACTCATTCCTTTGCCCCGGAAGGTTACCTCCTTCAGAACATATATTCCCTCAATTCTAAATATGGATCTGAGCGCCAATTAAGAGGTTTACTAAAAAAAATTGGGTTACCTCCCTCAGAAGATATATTCCATCGAATTGGGTTTATTTATTTACAGCTTACTCTGTTTTTTGTTTCCGAATATTCAATTAGTTATGCAGCTAAATATGTGAAGGAGTATATTGAAGGAGCAAAACCAATTTTTTCCACTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGGTAGTGAAGAGGAGGCCTTCTTTGATTTTAGGTATTGGTTGGACTTAGATTGTGAAGATGACTTCTACAGTAAGGAATCAGTCATGAAGTTCATTAAACTTGGATCTAGGCCAGATACCTTTTACACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

183

Amino Acids

21.2

Weight (kDa)

5.24

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017405)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g00450
rosa_chinensis	RchiOBHm_Chr1g0327581 RchiOBHm_Chr2g0111851 RchiOBHm_Chr3g0496411 RchiOBHm_Chr3g0496421 RchiOBHm_Chr6g0270761 RchiOBHm_Chr7g0227001 RchiOBHm_Chr7g0227031
rosa_roxburghii	Rroxscaffold_5G00354860 Rroxscaffold_6G00392060 Rroxscaffold_7G00194530
rosa_samantha	Rh2BG231900 Rh7CG448800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	187, 529
AcuI	CTGAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	300, 338
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	271, 314
AluI	AGCT	2 cut(s)	271, 314
AlwI	GGATC	2 cut(s)	187, 529
AoxI	GGCC	2 cut(s)	432, 527
ApeKI	GCWGC	2 cut(s)	106, 311
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	93, 323
BccI	CCATC	2 cut(s)	118, 252
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	2 cut(s)	107, 312
BlsI	GCNGC	2 cut(s)	108, 313
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	129, 415
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	129, 415
BseJI	GATNNNNATC	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	174, 243
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	93, 323
BshFI	GGCC	2 cut(s)	434, 529
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	2 cut(s)	434, 529
Bsp143I	GATC	3 cut(s)	8, 179, 521
BspANI	GGCC	2 cut(s)	434, 529
BspCNI	CTCAG	2 cut(s)	175, 242
BspHI	TCATGA	1 cut(s)	501
BspPI	GGATC	2 cut(s)	187, 529
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	129, 415
BssMI	GATC	3 cut(s)	8, 179, 521
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	420
BstDEI	CTNAG	4 cut(s)	183, 229, 463, 549
BstEII	GGTNACC	2 cut(s)	137, 219
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	11, 182, 524
BstMBI	GATC	3 cut(s)	8, 179, 521
BstPI	GGTNACC	2 cut(s)	137, 219
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	93, 323
BstX2I	RGATCY	2 cut(s)	179, 521
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	179, 521
BsuRI	GGCC	2 cut(s)	434, 529
BtsIMutI	CAGTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	43
CviAII	CATG	3 cut(s)	99, 398, 502
CviJI	RGCY	4 cut(s)	271, 314, 434, 529
CviKI_1	RGCY	4 cut(s)	271, 314, 434, 529
DdeI	CTNAG	4 cut(s)	183, 229, 463, 549
DpnI	GATC	3 cut(s)	10, 181, 523
DpnII	GATC	3 cut(s)	8, 179, 521
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	131
Eco91I	GGTNACC	2 cut(s)	137, 219
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	2 cut(s)	137, 219
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	102, 401, 505
FatI	CATG	3 cut(s)	98, 397, 501
Fnu4HI	GCNGC	2 cut(s)	107, 312
Fsp4HI	GCNGC	2 cut(s)	107, 312
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	107, 312
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	434, 529
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	102, 401, 505
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	377, 494
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	4 cut(s)	150, 184, 232, 292
Hpy188III	TCNNGA	3 cut(s)	68, 84, 502
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	5 cut(s)	128, 155, 319, 332, 445
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	3 cut(s)	77, 311, 384
HpyF3I	CTNAG	4 cut(s)	183, 229, 463, 549
Hsp92II	CATG	3 cut(s)	102, 401, 505
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	8, 179, 521
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	69, 81, 144, 348, 543
Lsp1109I	GCAGC	2 cut(s)	93, 323
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	137, 219
MalI	GATC	3 cut(s)	10, 181, 523
MboI	GATC	3 cut(s)	8, 179, 521
MboII	GAAGA	3 cut(s)	245, 437, 485
MflI	RGATCY	2 cut(s)	179, 521
MluCI	AATT	6 cut(s)	166, 191, 213, 249, 300, 351
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	152, 173, 191, 234, 238, 421, 424
MseI	TTAA	3 cut(s)	38, 194, 513
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	8, 179, 521
NlaIII	CATG	3 cut(s)	102, 401, 505
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	377, 494
PkrI	GCNGC	2 cut(s)	108, 313
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspEI	GGTNACC	2 cut(s)	137, 219
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	179, 521
RseI	CAYNNNNRTG	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	38, 194, 513
SatI	GCNGC	2 cut(s)	107, 312
Sau3AI	GATC	3 cut(s)	8, 179, 521
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	97
Sse9I	AATT	6 cut(s)	166, 191, 213, 249, 300, 351
SseBI	AGGCCT	1 cut(s)	434
SspI	AATATT	2 cut(s)	15, 296
SspMI	CTAG	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	1 cut(s)	247
TasI	AATT	6 cut(s)	166, 191, 213, 249, 300, 351
TfiI	GAWTC	2 cut(s)	377, 494
Tru1I	TTAA	3 cut(s)	38, 194, 513
Tru9I	TTAA	3 cut(s)	38, 194, 513
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	106, 311
TspDTI	ATGAA	2 cut(s)	499, 518
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.