pycom08g10000

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
8310866 .. 8311256
391 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGAGGATAAAAACAAGGATCAGAGCGTGCCCGCCGCCAATCCATATGATTTGAGGCAACATTTTGTGTTCATGCATGCGATTGTTGTAGCCATGCGGAATAATTGTCCTACTACTGAATGGCATTCTAAGAAATTTGTGCCCGAAGATGCGAAGAAGGCGGTGATGGATGAATTATTATGGAAGTATACTCTTGATGATGAAACGAACGAACAGTTGATGAAGTTGATGGAGGATGTGTTAGAGGGATGTTACAATTGGTGGCGTTATGATGTCGAACAGAATGGAGTACCATCGAAATAG

Protein Analysis

101

Amino Acids

11.88

Weight (kDa)

4.94

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022316)

Species Orthologous Gene IDs
malus_domestica MD06G1072100.v1.1 MD09G1237700.v1.1 MD17G1261600.v1.1
pyrus_communis pycom08g10000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AciI CCGC 4 cut(s) 33, 36, 97, 161
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 2 cut(s) 33, 144
BccI CCATC 3 cut(s) 160, 223, 301
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmsI GCATC 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
BseGI GGATG 3 cut(s) 175, 241, 254
BseSI GKGCMC 2 cut(s) 33, 144
BsmI GAATGC 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 33, 144
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 4 cut(s) 33, 36, 97, 161
BspPI GGATC 1 cut(s) 27
BssMI GATC 1 cut(s) 19
BssNAI GTATAC 1 cut(s) 189
Bst1107I GTATAC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 29, 33, 78
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 175, 241, 254
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 80
BstSLI GKGCMC 2 cut(s) 33, 144
BstZ17I GTATAC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 175, 241, 254
Cac8I GCNNGC 3 cut(s) 29, 33, 78
Csp6I GTAC 1 cut(s) 290
CviAII CATG 3 cut(s) 73, 77, 94
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 78
FaeI CATG 3 cut(s) 76, 80, 97
FaiI YATR 8 cut(s) 46, 48, 74, 78, 95, 181, 189, 270
FatI CATG 3 cut(s) 72, 76, 93
FauI CCCGC 1 cut(s) 40
FauNDI CATATG 1 cut(s) 46
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 3 cut(s) 182, 248, 261
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 76, 80, 97
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 76, 80, 97
Kzo9I GATC 1 cut(s) 19
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 158, 166
MfeI CAATTG 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 33, 144
MluCI AATT 4 cut(s) 103, 134, 173, 256
MnlI CCTC 3 cut(s) 48, 226, 238
Mph1103I ATGCAT 1 cut(s) 78
MunI CAATTG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 76, 80, 97
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 1 cut(s) 80
PaeI GCATGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 37
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 19
SduI GDGCHC 2 cut(s) 33, 144
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 8 cut(s) 28, 40, 44, 85, 89, 106, 155, 206
SphI GCATGC 1 cut(s) 80
Sse9I AATT 4 cut(s) 103, 134, 173, 256
SsiI CCGC 4 cut(s) 33, 36, 97, 161
TaaI ACNGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 276, 296
TasI AATT 4 cut(s) 103, 134, 173, 256
TauI GCSGC 1 cut(s) 38
TspDTI ATGAA 4 cut(s) 61, 186, 216, 236
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.