pycom08g11470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0024658
Physical Location & Seq
Forward (+)
9688540 .. 9689796
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11470.1

Sequence Viewer

Length: 1257 bp
ATGAGCAGTAAACTCCTCTGCCCATTTATTGGGGTTTCACTTCACGGCTCTTTAATTGGTAGAAACAATGGAAATTTCATTTATTGGGACAGAGGGCGTACGGGAAAAAGGGCTGCTCGTAGGTGTGTATGTGAAAAGCAGAACTATTGGATTTCTCAAGCAATTAAAGTTTCACATTTTTGGGGAAAAAATGTGGAATTATTAAGGCGAACCTTCGAGTTAAAAAATGGGATGAAGGTGCAATGTGTTAAAGAGCCCTTTTCTCGAAGCAAGGCTCTGGTGAGGTCTCTGTCTCCTCTGTTGGAAGAGGGGTTACTTTTAATTAGGTGCTCTGTACTTTTGGCCGTCATATCTGGGGTGTGCTTATTGGTATGGTACGGGCAATCCAAAACCAAGGATTTTATTGAAGCCAAGCTTTTGCCTTCTGTTTGTTCAGTACTCAGTGAATATGTTGAGCGCGAAGTTGTTTTTGGTAAGGTTCGGAGGTTATCACCTTTGAGCATCACACTGGACTCTTGTTCAATTGGGCCTCATAATGAGGAATTTTCTTGTGGTGAGGTCCCATCTATGAAACTTCGGCTTCATCCTTTTGCAAGTCTTAGGAGGGGAAGGATTGTGATTGATGCAGTTTTGTCGCATCCGACGGTCTTGGTTGCACAAAAGAAGGATTATACTTGGTTAGGGATACCCTCAATTGAAGGTGGTCTACAGAGGCACTTATCTAACGAAGAAGGAATTGATCATCGAACCAAAATCCGAAGGCTTTCTAGAGAAGAAGCGGCTGCTTGCTGGGAAAGAGAAAGAGATGAAGCGGCAAAAAAAGCTGTAGAGATGGGTTACATTGTTTCTGACAAGGGTTCCAGTCCTTCAAATGGCAATGACTCAAAGGAAGGTGATAGCCATTCAGTAGATTTAACAAGTTCTGAGTCATTTCCATGCATGGATGAAAAGATGCACTGGAGGGATCATTGCATGGACACAGGCGTTGATTATGAAATAAAGCATGCAGATTTGGAGAAATCGTTGGGTGTCAAAATTCCTGGGTCAGGGCTTAAATTTTGGTCCAGAGTGATAAAGGGGCCTAAAAAGCACAAATTTAAAAGGAAGGGTTATGGGAGTGATATCTCTGCATCCGGTATTACTGCCAAAAGAAGAATTCTTGGGTACAGTGCAGCAAGGGCACTTGCATATTTTCAAACGATCTATCTCATCGGAAGTCTGACGAGCCTTTACAGTCATCCGGAGGTTATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

419

Amino Acids

46.93

Weight (kDa)

9.41

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024658)

Species Orthologous Gene IDs
pyrus_communis pycom08g11470 pycom15g10360
rosa_multiflora Rmu_co8429225.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 1 cut(s) 706
AccII CGCG 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 1240
AciI CCGC 2 cut(s) 779, 812
AclWI GGATC 1 cut(s) 972
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 6 cut(s) 73, 542, 1035, 1055, 1094, 1155
AfaI GTAC 5 cut(s) 100, 336, 377, 438, 1166
AfiI CCNNNNNNNGG 3 cut(s) 29, 872, 1046
AgsI TTSAA 5 cut(s) 407, 522, 698, 870, 1196
AjnI CCWGG 1 cut(s) 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 2 cut(s) 415, 824
AluI AGCT 2 cut(s) 415, 824
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 2 cut(s) 291, 297
AlwI GGATC 1 cut(s) 972
Aor13HI TCCGGA 1 cut(s) 1240
AoxI GGCC 3 cut(s) 342, 527, 1079
ApeKI GCWGC 3 cut(s) 113, 782, 1172
ApoI RAATTY 6 cut(s) 73, 542, 1035, 1055, 1094, 1155
Asp700I GAANNNNTTC 1 cut(s) 763
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 4 cut(s) 527, 559, 1062, 1079
AsuHPI GGTGA 4 cut(s) 292, 483, 566, 905
AvaII GGWCC 2 cut(s) 559, 1062
BaeGI GKGCMC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 4 cut(s) 297, 329, 690, 722
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 100, 769, 1184
BccI CCATC 2 cut(s) 571, 826
BceAI ACGGC 2 cut(s) 61, 329
BcgI CGANNNNNNTGC 2 cut(s) 615, 649
BciT130I CCWGG 1 cut(s) 1041
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 291, 297
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 2 cut(s) 707, 825
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 5 cut(s) 114, 780, 783, 813, 1173
BlsI GCNGC 5 cut(s) 115, 781, 784, 814, 1174
BmcAI AGTACT 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 1041
Bme18I GGWCC 2 cut(s) 559, 1062
BmgT120I GGNCC 4 cut(s) 527, 559, 1062, 1079
BmiI GGNNCC 3 cut(s) 561, 859, 1080
BmrFI CCNGG 1 cut(s) 1041
BmsI GCATC 5 cut(s) 510, 613, 646, 942, 1139
BpmI CTGGAG 1 cut(s) 979
BpuEI CTTGAG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 393, 1040
BsaWI WCCGGW 2 cut(s) 1133, 1240
BsaXI ACNNNNNCTCC 2 cut(s) 1007, 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 872, 1046
Bse1I ACTGG 3 cut(s) 513, 861, 962
Bse3DI GCAATG 3 cut(s) 248, 883, 967
BseAI TCCGGA 1 cut(s) 1240
BseBI CCWGG 1 cut(s) 1041
BseDI CCNNGG 2 cut(s) 393, 1040
BseGI GGATG 6 cut(s) 237, 583, 637, 949, 1130, 1237
BseLI CCNNNNNNNGG 3 cut(s) 29, 872, 1046
BseMI GCAATG 3 cut(s) 248, 883, 967
BseMII CTCAG 2 cut(s) 454, 915
BseNI ACTGG 3 cut(s) 513, 861, 962
BseRI GAGGAG 2 cut(s) 5, 285
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 3 cut(s) 100, 769, 1184
BseYI CCCAGC 1 cut(s) 789
BsgI GTGCAG 1 cut(s) 1191
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 3 cut(s) 344, 529, 1081
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 2 cut(s) 1134, 1241
BsiWI CGTACG 1 cut(s) 98
BslFI GGGAC 2 cut(s) 101, 545
BslI CCNNNNNNNGG 3 cut(s) 29, 872, 1046
BsmAI GTCTC 2 cut(s) 291, 297
BsmFI GGGAC 2 cut(s) 101, 545
BsnI GGCC 3 cut(s) 344, 529, 1081
Bso31I GGTCTC 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 258, 332, 1183
Bsp13I TCCGGA 1 cut(s) 1240
Bsp143I GATC 3 cut(s) 739, 964, 1200
BspACI CCGC 2 cut(s) 779, 812
BspANI GGCC 3 cut(s) 344, 529, 1081
BspCNI CTCAG 2 cut(s) 453, 916
BspEI TCCGGA 1 cut(s) 1240
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 3 cut(s) 561, 859, 1080
BspPI GGATC 1 cut(s) 972
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 3 cut(s) 248, 883, 967
BsrI ACTGG 3 cut(s) 513, 861, 962
BssECI CCNNGG 2 cut(s) 393, 1040
BssMI GATC 3 cut(s) 739, 964, 1200
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 1041
Bst4CI ACNGT 3 cut(s) 646, 1169, 1235
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 787, 1005
BstDEI CTNAG 3 cut(s) 440, 599, 924
BstENI CCTNNNNNAGG 1 cut(s) 1044
BstF5I GGATG 6 cut(s) 237, 583, 637, 949, 1130, 1237
BstFNI CGCG 1 cut(s) 459
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 3 cut(s) 742, 967, 1203
BstMAI GTCTC 2 cut(s) 291, 297
BstMBI GATC 3 cut(s) 739, 964, 1200
BstMWI GCNNNNNNNGC 3 cut(s) 821, 1087, 1178
BstNI CCWGG 1 cut(s) 1041
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 1 cut(s) 1039
BstSFI CTRYAG 2 cut(s) 707, 825
BstSLI GKGCMC 1 cut(s) 1183
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 100, 769, 1184
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 3 cut(s) 344, 529, 1081
BtsCI GGATG 6 cut(s) 237, 583, 637, 949, 1130, 1237
BtsIMutI CAGTG 4 cut(s) 448, 506, 955, 1174
Cac8I GCNNGC 2 cut(s) 787, 1005
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 4 cut(s) 527, 559, 1062, 1079
Csp6I GTAC 5 cut(s) 99, 335, 376, 437, 1165
CviAII CATG 4 cut(s) 936, 940, 973, 1004
CviQI GTAC 5 cut(s) 99, 335, 376, 437, 1165
DdeI CTNAG 3 cut(s) 440, 599, 924
DpnI GATC 3 cut(s) 741, 966, 1202
DpnII GATC 3 cut(s) 739, 964, 1200
DraI TTTAAA 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 1123
Eco47I GGWCC 2 cut(s) 559, 1062
EcoNI CCTNNNNNAGG 1 cut(s) 1044
EcoO109I RGGNCCY 2 cut(s) 559, 1079
EcoRI GAATTC 1 cut(s) 1155
EcoRII CCWGG 1 cut(s) 1039
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 941
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 4 cut(s) 939, 943, 976, 1007
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 2 cut(s) 101, 545
FatI CATG 4 cut(s) 935, 939, 972, 1003
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 5 cut(s) 114, 780, 783, 813, 1173
FokI GGATG 6 cut(s) 244, 570, 624, 956, 1117, 1224
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 114, 780, 783, 813, 1173
FspBI CTAG 1 cut(s) 768
GlaI GCGC 1 cut(s) 458
GluI GCNGC 5 cut(s) 114, 780, 783, 813, 1173
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 1 cut(s) 979
HaeIII GGCC 3 cut(s) 344, 529, 1081
HapII CCGG 2 cut(s) 1134, 1241
HhaI GCGC 1 cut(s) 459
Hin1II CATG 4 cut(s) 939, 943, 976, 1007
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 3 cut(s) 512, 881, 926
HpaII CCGG 2 cut(s) 1134, 1241
HphI GGTGA 4 cut(s) 292, 483, 566, 905
Hpy166II GTNNAC 2 cut(s) 11, 707
Hpy188I TCNGA 7 cut(s) 483, 642, 758, 850, 925, 1214, 1221
Hpy188III TCNNGA 4 cut(s) 264, 768, 1065, 1241
Hpy8I GTNNAC 2 cut(s) 11, 707
Hpy99I CGWCG 1 cut(s) 646
HpyCH4III ACNGT 3 cut(s) 646, 1169, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 821, 1087, 1178
HpyF3I CTNAG 3 cut(s) 440, 599, 924
Hsp92II CATG 4 cut(s) 939, 943, 976, 1007
HspAI GCGC 1 cut(s) 457
Kpn2I TCCGGA 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 3 cut(s) 739, 964, 1200
Lsp1109I GCAGC 3 cut(s) 100, 769, 1184
LweI GCATC 5 cut(s) 510, 613, 646, 942, 1139
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 2 cut(s) 312, 836
MalI GATC 3 cut(s) 741, 966, 1202
MboI GATC 3 cut(s) 739, 964, 1200
MboII GAAGA 4 cut(s) 317, 740, 785, 1164
MfeI CAATTG 2 cut(s) 522, 693
MhlI GDGCHC 3 cut(s) 258, 332, 1183
MlyI GAGTC 3 cut(s) 506, 875, 935
MmeI TCCRAC 2 cut(s) 282, 665
Mph1103I ATGCAT 1 cut(s) 941
MroI TCCGGA 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 9 cut(s) 53, 165, 203, 221, 249, 320, 914, 1053, 1098
MslI CAYNNNNRTG 1 cut(s) 934
MspI CCGG 2 cut(s) 1134, 1241
MspR9I CCNGG 1 cut(s) 1041
MunI CAATTG 2 cut(s) 522, 693
MvaI CCWGG 1 cut(s) 1041
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 3 cut(s) 821, 1087, 1178
NdeII GATC 3 cut(s) 739, 964, 1200
NlaIII CATG 4 cut(s) 939, 943, 976, 1007
NlaIV GGNNCC 3 cut(s) 561, 859, 1080
NsiI ATGCAT 1 cut(s) 941
NspI RCATGY 1 cut(s) 1007
PaeI GCATGC 1 cut(s) 1007
PdmI GAANNNNTTC 1 cut(s) 763
Pfl23II CGTACG 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 5 cut(s) 115, 781, 784, 814, 1174
PleI GAGTC 3 cut(s) 506, 875, 934
PpsI GAGTC 3 cut(s) 506, 875, 934
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 1039
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 1 cut(s) 1039
PspLI CGTACG 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 561, 859, 1080
PspPI GGNCC 4 cut(s) 527, 559, 1062, 1079
PspPPI RGGWCCY 1 cut(s) 559
RsaI GTAC 5 cut(s) 100, 336, 377, 438, 1166
RsaNI GTAC 5 cut(s) 99, 335, 376, 437, 1165
RseI CAYNNNNRTG 1 cut(s) 934
SaqAI TTAA 9 cut(s) 53, 165, 203, 221, 249, 320, 914, 1053, 1098
SatI GCNGC 5 cut(s) 114, 780, 783, 813, 1173
Sau3AI GATC 3 cut(s) 739, 964, 1200
Sau96I GGNCC 4 cut(s) 527, 559, 1062, 1079
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 3 cut(s) 506, 875, 935
ScrFI CCNGG 1 cut(s) 1041
SduI GDGCHC 3 cut(s) 258, 332, 1183
SfaNI GCATC 5 cut(s) 510, 613, 646, 942, 1139
SfcI CTRYAG 2 cut(s) 707, 825
SinI GGWCC 2 cut(s) 559, 1062
SmiMI CAYNNNNRTG 1 cut(s) 934
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SphI GCATGC 1 cut(s) 1007
SsiI CCGC 2 cut(s) 779, 812
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 1 cut(s) 1039
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 3 cut(s) 646, 1169, 1235
TaqI TCGA 3 cut(s) 216, 265, 745
TatI WGTACW 2 cut(s) 334, 436
TauI GCSGC 2 cut(s) 782, 815
Tru1I TTAA 9 cut(s) 53, 165, 203, 221, 249, 320, 914, 1053, 1098
Tru9I TTAA 9 cut(s) 53, 165, 203, 221, 249, 320, 914, 1053, 1098
TscAI CASTG 4 cut(s) 448, 513, 962, 1174
TseI GCWGC 3 cut(s) 113, 782, 1172
TspDTI ATGAA 7 cut(s) 67, 248, 572, 584, 822, 960, 1008
TspRI CASTG 4 cut(s) 448, 513, 962, 1174
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 559, 1062
XagI CCTNNNNNAGG 1 cut(s) 1044
XapI RAATTY 6 cut(s) 73, 542, 1035, 1055, 1094, 1155
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 1 cut(s) 768
ZrmI AGTACT 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.