pycom15g10360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0024658
Physical Location & Seq
Forward (+)
6868627 .. 6869397
771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10360.1

Sequence Viewer

Length: 771 bp
ATGAGCGGAAAACTCCACTGCCCATTTCTTGGGGTTTCACTACACAGCTCTTTAAATGGTAGAAACAATGGAAATTTCATTTGTTGGGGCAGAGGGTGTACGGGAAAAAGGGCTGCTCGCAGGTGTGTATGTGAAAAGCAGAACTTTTGGATTACTCAAGCGATTAAGGTTTCACATTTTTGGGGAAAAAATGTGGAATTATTAAGGAGAACCTTCGAGCTAAAAAATGGGATGAAGGTGCAATGTGTTAAAGAGCCCTTTTCTCGAATCAAGGCTCTGACGTGGTCTTTGTCTCCTCTGTTGGAAGAGGGGTTGCTTTTAATTAGGTGCTCTGTATTTTTGGCCACCATATCCGGTGTATGCTTATTGGTATGGTATGGGCAATTAAAAGCCAAGGGTTTTATTGAAGCCATGCTTTTGCCTTCTGTTTGTTCAGTACTCAGTGAATATATTCAGCGTGAAGTTGTTTTTAGTAAGGTTCGGAGGTTATCACCTTTGAGCGTCACACTGGAGTCTTGTTCAATTGGGCCTCATAATGAGGAATTTTCTTGTGGTGAGGTCCCATCTATGAAACTTCGGCTTCGTCCTTTTGCAAGTCTGAGGAGGGGAAGGATTGTGGTTGATGCAGTTTTGTTGCATCCAACGGTCTTGGTTGCACAGAAGAAGGATTATTCTTGGTTAGGGATACCCTCAAATGAAGGTGGTCTACAGAGGCACTTATCTAACGAAGAGGGAATTGATCGATCGAACCAAAATCCGAAGGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

257

Amino Acids

28.7

Weight (kDa)

9.59

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024658)

Species Orthologous Gene IDs
pyrus_communis pycom08g11470 pycom15g10360
rosa_multiflora Rmu_co8429225.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 706
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 2 cut(s) 73, 542
AfaI GTAC 2 cut(s) 100, 438
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 407, 522
AjiI CACGTC 1 cut(s) 282
AluBI AGCT 2 cut(s) 48, 220
AluI AGCT 2 cut(s) 48, 220
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 297
AoxI GGCC 2 cut(s) 342, 527
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 73, 542
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
Asp700I GAANNNNTTC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 527, 559
AsuHPI GGTGA 2 cut(s) 483, 566
AvaII GGWCC 1 cut(s) 559
BalI TGGCCA 1 cut(s) 344
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 690, 722
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 571
BciVI GTATCC 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 769
BfmI CTRYAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 111
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 559
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 527, 559
BmiI GGNNCC 1 cut(s) 561
BmsI GCATC 2 cut(s) 613, 646
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 742
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 742
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 237, 637
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 454, 590
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 2 cut(s) 285, 616
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 746
BshFI GGCC 2 cut(s) 344, 529
BshVI ATCGAT 1 cut(s) 742
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 2 cut(s) 344, 529
Bsp1286I GDGCHC 2 cut(s) 258, 332
Bsp143I GATC 2 cut(s) 739, 743
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 344, 529
BspCNI CTCAG 2 cut(s) 453, 591
BspDI ATCGAT 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 739, 743
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 2 cut(s) 300, 723
BstC8I GCNNGC 2 cut(s) 118, 766
BstDEI CTNAG 2 cut(s) 440, 599
BstF5I GGATG 2 cut(s) 237, 637
BstKTI GATC 2 cut(s) 742, 746
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 739, 743
BstMCI CGRYCG 1 cut(s) 746
BstSFI CTRYAG 1 cut(s) 707
BstV1I GCAGC 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 742
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 344, 529
BsuTUI ATCGAT 1 cut(s) 742
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 237, 637
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 448, 506
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 118, 766
Cfr13I GGNCC 2 cut(s) 527, 559
ClaI ATCGAT 1 cut(s) 742
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 99, 437
CviAII CATG 1 cut(s) 412
CviQI GTAC 2 cut(s) 99, 437
DdeI CTNAG 2 cut(s) 440, 599
DpnI GATC 2 cut(s) 741, 745
DpnII GATC 2 cut(s) 739, 743
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 300, 723
EarI CTCTTC 2 cut(s) 300, 723
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 1 cut(s) 415
FaiI YATR 9 cut(s) 130, 350, 361, 373, 378, 413, 450, 534, 569
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 399, 431
FaqI GGGAC 1 cut(s) 545
FatI CATG 1 cut(s) 411
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 244, 624
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 769
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 2 cut(s) 344, 529
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 490
Hin1II CATG 1 cut(s) 415
HinfI GANTC 2 cut(s) 267, 512
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 483, 566
Hpy166II GTNNAC 2 cut(s) 99, 707
Hpy188I TCNGA 4 cut(s) 279, 483, 600, 759
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 2 cut(s) 99, 707
HpyAV CCTTC 7 cut(s) 223, 229, 432, 603, 658, 692, 754
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 241, 593, 626, 637, 656
HpyF3I CTNAG 2 cut(s) 440, 599
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 415
Kzo9I GATC 2 cut(s) 739, 743
LpnPI CCDG 3 cut(s) 106, 367, 494
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 613, 646
MaeI CTAG 1 cut(s) 769
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 502
MalI GATC 2 cut(s) 741, 745
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 739, 743
MboII GAAGA 3 cut(s) 317, 673, 740
MfeI CAATTG 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 258, 332
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 7 cut(s) 73, 197, 321, 383, 522, 542, 735
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 2 cut(s) 282, 665
Mox20I TGGCCA 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 344
MseI TTAA 6 cut(s) 53, 165, 203, 249, 320, 386
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 522
NdeII GATC 2 cut(s) 739, 743
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 502
PaqCI CACCTGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 1 cut(s) 115
Ple19I CGATCG 1 cut(s) 746
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 2 cut(s) 527, 559
PspPPI RGGWCCY 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 283
PvuI CGATCG 1 cut(s) 746
RsaI GTAC 2 cut(s) 100, 438
RsaNI GTAC 2 cut(s) 99, 437
SaqAI TTAA 6 cut(s) 53, 165, 203, 249, 320, 386
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 739, 743
Sau96I GGNCC 2 cut(s) 527, 559
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 2 cut(s) 258, 332
SfaNI GCATC 2 cut(s) 613, 646
SfcI CTRYAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 7 cut(s) 73, 197, 321, 383, 522, 542, 735
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 1 cut(s) 284
TaqI TCGA 4 cut(s) 216, 265, 742, 746
TasI AATT 7 cut(s) 73, 197, 321, 383, 522, 542, 735
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 6 cut(s) 53, 165, 203, 249, 320, 386
Tru9I TTAA 6 cut(s) 53, 165, 203, 249, 320, 386
TscAI CASTG 3 cut(s) 23, 448, 513
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 4 cut(s) 67, 248, 584, 711
TspRI CASTG 3 cut(s) 23, 448, 513
Tth111I GACNNNGTC 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 2 cut(s) 73, 542
XmiI GTMKAC 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 1 cut(s) 769
ZrmI AGTACT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.