Rmu_co8429225.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8429225.1
OG0024658
Physical Location & Seq
Reverse (-)
1 .. 1162
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8429225.1_g000001.1.cds

Sequence Viewer

Length: 1153 bp
atgcgagtttcacatttttgggggaaaaatgtggagttattaaagagaacctttgagctgaaaaatggcaagatacaatgtgttaaagaacctttttctcaaagcaaggctctggtgaggtctttatctcctctgtgggaggaggggttacttttagttaggtgctctgtatttgttgccgtgatatctggggtatgcttgttggtatggtatgggcagaaaaaagccaagggtcttattgaagccagggttttgccttctgtttgctcagtactcagtgagtatattcagcgcgaaattgtttttggtaaggttcaaaggatatcacctctgagcatcacattggaggcgagttcagttggccctcataatgaggaattttcttgtggtgaggtcccatctatgaaacttctttttcgtccttttgcaagtctgaggaggggaaggattgtgattgatgcagttttatcccatccaactgtcttgattgcgcagaagaaggattatacatggttagggataccctcatccgaaggtagtctgcagaggcacttatcaacagaagaaggaattgatcatcgtacaaaaacccggaggctagctagagaggaagcagctgatcgctgggaaagagcaagggatgaagcagctagaaaagctgcagagatgggttacattatttcagacaagggttctactccatccaaaggtgatgattcaaaggaaggtgatagccattcaggggatttaacaacctctgaatcgtttttatgcatggatgaaaagatgcactggagagatcactgcatggacacaggtgtcgattatgatatcaaacatgcagacttggagaaatcattgggtgttaaaataccgggttctgggcttaaattttggtccagagtgataaagggacctaaaaagcacaaattcaaaaggaagggcattgggaatgatatttctgcatctggttttactgccaaaagaagaattcttggggatagtgcagtaagggcacttgcatattttcaggatttggtgcatgggaagtctgatgaactttcacaggcatccggaagttatgatgtgatgaaccttgacacctatttgatgaagaatgaggttgctaataatgccaacactagtgtcgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

384

Amino Acids

42.82

Weight (kDa)

9.14

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024658)

Species Orthologous Gene IDs
pyrus_communis pycom08g11470 pycom15g10360
rosa_multiflora Rmu_co8429225.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
Acc16I TGCGCA 1 cut(s) 492
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 1073
AcsI RAATTY 4 cut(s) 377, 890, 929, 990
AfaI GTAC 2 cut(s) 273, 583
AfiI CCNNNNNNNGG 3 cut(s) 707, 742, 881
AgsI TTSAA 4 cut(s) 242, 317, 720, 934
AhlI ACTAGT 1 cut(s) 1142
AjnI CCWGG 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 5 cut(s) 58, 602, 617, 650, 659
AluI AGCT 5 cut(s) 58, 602, 617, 650, 659
Alw21I GWGCWC 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 1073
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 3 cut(s) 614, 647, 659
ApoI RAATTY 4 cut(s) 377, 890, 929, 990
AspLEI GCGC 2 cut(s) 294, 493
AspS9I GGNCC 4 cut(s) 362, 394, 897, 914
AsuC2I CCSGG 2 cut(s) 592, 876
AsuHPI GGTGA 5 cut(s) 127, 318, 401, 722, 740
AsuNHI GCTAGC 1 cut(s) 598
AvaII GGWCC 3 cut(s) 394, 897, 914
BaeGI GKGCMC 1 cut(s) 1018
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 626, 646, 659
BccI CCATC 4 cut(s) 406, 480, 661, 709
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 247
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 2 cut(s) 592, 876
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 4 cut(s) 599, 603, 651, 1143
BfmI CTRYAG 2 cut(s) 542, 660
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 3 cut(s) 615, 648, 660
BlsI GCNGC 3 cut(s) 616, 649, 661
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 247, 592, 876
Bme18I GGWCC 3 cut(s) 394, 897, 914
BmgT120I GGNCC 4 cut(s) 362, 394, 897, 914
BmiI GGNNCC 2 cut(s) 396, 915
BmrFI CCNGG 3 cut(s) 247, 592, 876
BmsI GCATC 5 cut(s) 345, 448, 777, 974, 1079
BmtI GCTAGC 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 814
BpuMI CCSGG 2 cut(s) 592, 876
BsaJI CCNNGG 2 cut(s) 228, 246
BsaWI WCCGGW 1 cut(s) 1073
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 707, 742, 881
Bse1I ACTGG 1 cut(s) 797
BseAI TCCGGA 1 cut(s) 1073
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 228, 246
BseGI GGATG 6 cut(s) 472, 527, 646, 701, 784, 1070
BseLI CCNNNNNNNGG 3 cut(s) 707, 742, 881
BseMII CTCAG 4 cut(s) 282, 289, 323, 425
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 3 cut(s) 120, 155, 451
BseSI GKGCMC 1 cut(s) 1018
BseXI GCAGC 3 cut(s) 626, 646, 659
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 1026
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 3 cut(s) 592, 875, 1074
BslFI GGGAC 2 cut(s) 380, 927
BslI CCNNNNNNNGG 3 cut(s) 707, 742, 881
BsmFI GGGAC 2 cut(s) 380, 927
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 167, 1018
Bsp13I TCCGGA 1 cut(s) 1073
Bsp143I GATC 3 cut(s) 574, 619, 799
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 4 cut(s) 281, 288, 324, 426
BspEI TCCGGA 1 cut(s) 1073
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 396, 915
BspMAI CTGCAG 2 cut(s) 546, 664
BspOI GCTAGC 1 cut(s) 602
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 2 cut(s) 228, 246
BssMI GATC 3 cut(s) 574, 619, 799
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 4 cut(s) 268, 275, 332, 434
BstF5I GGATG 6 cut(s) 472, 527, 646, 701, 784, 1070
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 2 cut(s) 294, 493
BstKTI GATC 3 cut(s) 577, 622, 802
BstMBI GATC 3 cut(s) 574, 619, 799
BstMWI GCNNNNNNNGC 3 cut(s) 656, 1013, 1133
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 245, 590, 874
BstSFI CTRYAG 2 cut(s) 542, 660
BstSLI GKGCMC 1 cut(s) 1018
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 626, 646, 659
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 6 cut(s) 472, 527, 646, 701, 784, 1070
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 283, 790, 802
Cac8I GCNNGC 1 cut(s) 600
CfoI GCGC 2 cut(s) 294, 493
Cfr13I GGNCC 4 cut(s) 362, 394, 897, 914
Csp6I GTAC 2 cut(s) 272, 582
CviAII CATG 5 cut(s) 510, 775, 808, 839, 1043
CviQI GTAC 2 cut(s) 272, 582
DdeI CTNAG 4 cut(s) 268, 275, 332, 434
DpnI GATC 3 cut(s) 576, 621, 801
DpnII GATC 3 cut(s) 574, 619, 799
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
Eco130I CCWWGG 1 cut(s) 228
Eco32I GATATC 3 cut(s) 186, 324, 832
Eco47I GGWCC 3 cut(s) 394, 897, 914
EcoO109I RGGNCCY 2 cut(s) 394, 914
EcoRI GAATTC 1 cut(s) 990
EcoRII CCWGG 1 cut(s) 245
EcoRV GATATC 3 cut(s) 186, 324, 832
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 5 cut(s) 513, 778, 811, 842, 1046
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 380, 927
FatI CATG 5 cut(s) 509, 774, 807, 838, 1042
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 3 cut(s) 615, 648, 660
FokI GGATG 6 cut(s) 459, 514, 653, 688, 791, 1057
Fsp4HI GCNGC 3 cut(s) 615, 648, 660
FspBI CTAG 4 cut(s) 599, 603, 651, 1143
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 2 cut(s) 293, 492
GluI GCNGC 3 cut(s) 615, 648, 660
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 814
HaeIII GGCC 1 cut(s) 363
HapII CCGG 3 cut(s) 592, 875, 1074
HhaI GCGC 2 cut(s) 294, 493
Hin1II CATG 5 cut(s) 513, 778, 811, 842, 1046
Hin6I GCGC 2 cut(s) 292, 491
HinP1I GCGC 2 cut(s) 292, 491
HinfI GANTC 2 cut(s) 716, 761
HpaII CCGG 3 cut(s) 592, 875, 1074
HphI GGTGA 5 cut(s) 127, 318, 401, 722, 740
Hpy188I TCNGA 6 cut(s) 333, 435, 532, 685, 760, 1054
Hpy188III TCNNGA 4 cut(s) 484, 900, 1031, 1074
HpyAV CCTTC 7 cut(s) 267, 438, 493, 527, 560, 719, 934
HpyCH4III ACNGT 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 3 cut(s) 656, 1013, 1133
HpyF3I CTNAG 4 cut(s) 268, 275, 332, 434
Hsp92II CATG 5 cut(s) 513, 778, 811, 842, 1046
HspAI GCGC 2 cut(s) 292, 491
Kpn2I TCCGGA 1 cut(s) 1073
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 3 cut(s) 574, 619, 799
Lsp1109I GCAGC 3 cut(s) 626, 646, 659
LweI GCATC 5 cut(s) 345, 448, 777, 974, 1079
MaeI CTAG 4 cut(s) 599, 603, 651, 1143
MaeIII GTNAC 2 cut(s) 147, 671
MalI GATC 3 cut(s) 576, 621, 801
MboI GATC 3 cut(s) 574, 619, 799
MboII GAAGA 4 cut(s) 508, 575, 999, 1126
MhlI GDGCHC 2 cut(s) 167, 1018
MluCI AATT 6 cut(s) 297, 377, 570, 890, 929, 990
MmeI TCCRAC 1 cut(s) 500
Mph1103I ATGCAT 1 cut(s) 776
MroI TCCGGA 1 cut(s) 1073
MseI TTAA 5 cut(s) 41, 84, 749, 867, 888
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 3 cut(s) 592, 875, 1074
MspR9I CCNGG 3 cut(s) 247, 592, 876
MvaI CCWGG 1 cut(s) 247
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 656, 1013, 1133
NciI CCSGG 2 cut(s) 592, 876
NdeII GATC 3 cut(s) 574, 619, 799
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 5 cut(s) 513, 778, 811, 842, 1046
NlaIV GGNNCC 2 cut(s) 396, 915
NsbI TGCGCA 1 cut(s) 492
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 1 cut(s) 842
PfeI GAWTC 2 cut(s) 716, 761
PkrI GCNGC 3 cut(s) 616, 649, 661
PpuMI RGGWCCY 2 cut(s) 394, 914
Psp5II RGGWCCY 2 cut(s) 394, 914
Psp6I CCWGG 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 396, 915
PspPI GGNCC 4 cut(s) 362, 394, 897, 914
PspPPI RGGWCCY 2 cut(s) 394, 914
PstI CTGCAG 2 cut(s) 546, 664
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 273, 583
RsaNI GTAC 2 cut(s) 272, 582
SaqAI TTAA 5 cut(s) 41, 84, 749, 867, 888
SatI GCNGC 3 cut(s) 615, 648, 660
Sau3AI GATC 3 cut(s) 574, 619, 799
Sau96I GGNCC 4 cut(s) 362, 394, 897, 914
ScaI AGTACT 1 cut(s) 273
ScrFI CCNGG 3 cut(s) 247, 592, 876
SduI GDGCHC 2 cut(s) 167, 1018
SfaNI GCATC 5 cut(s) 345, 448, 777, 974, 1079
SfcI CTRYAG 2 cut(s) 542, 660
SinI GGWCC 3 cut(s) 394, 897, 914
SpeI ACTAGT 1 cut(s) 1142
Sse9I AATT 6 cut(s) 297, 377, 570, 890, 929, 990
SspMI CTAG 4 cut(s) 599, 603, 651, 1143
StyD4I CCNGG 3 cut(s) 245, 590, 874
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 822
TasI AATT 6 cut(s) 297, 377, 570, 890, 929, 990
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 2 cut(s) 716, 761
Tru1I TTAA 5 cut(s) 41, 84, 749, 867, 888
Tru9I TTAA 5 cut(s) 41, 84, 749, 867, 888
TscAI CASTG 3 cut(s) 283, 797, 809
TseI GCWGC 3 cut(s) 614, 647, 659
TspDTI ATGAA 6 cut(s) 419, 657, 795, 1071, 1106, 1127
TspRI CASTG 3 cut(s) 283, 797, 809
VpaK11BI GGWCC 3 cut(s) 394, 897, 914
XapI RAATTY 4 cut(s) 377, 890, 929, 990
XceI RCATGY 1 cut(s) 842
XspI CTAG 4 cut(s) 599, 603, 651, 1143
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.