Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0024659

Physical Location & Seq

Genomic Coordinates Reverse (-)

11854841 .. 11856151

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATAGGATGAGAGTCGTATACCGAAAATCTCTAACCGAACTAAAAATGTCACGAAACCGAACCGAAAATGTCTCAAATCCAAAATCTTGGATAGGATGGGAGTCAGTCCTCCGGAAATACTTCTCTGAGGACAAGGGACCAATAACTAAAATTGATCCAATTGGAAATTCTCCCGTCATCGTTGGGAAGGAATCTCTCAAGAAAATTGCTCCCACGTGGATGAATGTTTCTTTGGCAATGAAGAAGGATCCTGAGACAGATAAAGCTTTTGGTTGGGTTCCTGAAATGTATGCTTATGCTGTTGCATCTGCTCACCATGGGGTTGGTAATATCTTATACAAGGACTTCATGCTTCAGCCTCCGTGGGATAAAAAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGGGTGAACTAACATATGGGAAAATTGGAGAATGGAGATTTGATAAAAGGTCTTATGATACTGTCGCACCGCCTAGAAACCTTACTATGCCTCCACATGGTGTTCCAGAAAGTGTGGTGACCCTGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCAAAGTGGGGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.05

Weight (kDa)

9.47

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	35 - 199	6.4e-64	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024659)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g13230 pycom08g13250
rosa_samantha	Rh5AG333900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	3 cut(s)	152, 245, 258
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	527, 596
AjnI	CCWGG	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	4 cut(s)	154, 186, 218, 250
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	79, 251
AlwI	GGATC	3 cut(s)	152, 245, 258
Aor13HI	TCCGGA	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	5 cut(s)	308, 446, 559, 568, 577
AvaII	GGWCC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	219
BccI	CCATC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	79, 251
BfaI	CTAG	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	141, 252, 282
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	319, 365, 552
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 596
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	3 cut(s)	319, 365, 552
BseGI	GGATG	4 cut(s)	15, 104, 228, 419
BseLI	CCNNNNNNNGG	2 cut(s)	527, 596
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	120, 246
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	527, 596
BsmAI	GTCTC	2 cut(s)	79, 251
BsmFI	GGGAC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	157, 250
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	500
BspCNI	CTCAG	2 cut(s)	121, 247
BspEI	TCCGGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	141, 252, 282
BspPI	GGATC	3 cut(s)	152, 245, 258
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	319, 365, 552
BssMI	GATC	2 cut(s)	157, 250
BssNAI	GTATAC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	129, 255
BstDSI	CCRYGG	2 cut(s)	319, 365
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	4 cut(s)	15, 104, 228, 419
BstKTI	GATC	2 cut(s)	160, 253
BstMAI	GTCTC	2 cut(s)	79, 251
BstMBI	GATC	2 cut(s)	157, 250
BstNI	CCWGG	1 cut(s)	554
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	2 cut(s)	90, 326
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	22
BtgI	CCRYGG	2 cut(s)	319, 365
BtsCI	GGATG	4 cut(s)	15, 104, 228, 419
Cfr13I	GGNCC	1 cut(s)	140
CviAII	CATG	3 cut(s)	320, 352, 527
CviJI	RGCY	3 cut(s)	269, 361, 575
CviKI_1	RGCY	3 cut(s)	269, 361, 575
DdeI	CTNAG	2 cut(s)	129, 255
DpnI	GATC	2 cut(s)	159, 252
DpnII	GATC	2 cut(s)	157, 250
DraIII	CACNNNGTG	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	323, 355, 530
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	319, 351, 526
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	21
FokI	GGATG	4 cut(s)	22, 111, 235, 426
FspBI	CTAG	1 cut(s)	504
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	3 cut(s)	323, 355, 530
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	3 cut(s)	15, 104, 194
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	5 cut(s)	308, 446, 559, 568, 577
Hpy166II	GTNNAC	2 cut(s)	22, 437
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	6 cut(s)	54, 115, 202, 254, 284, 536
Hpy8I	GTNNAC	2 cut(s)	22, 437
HpyAV	CCTTC	3 cut(s)	184, 241, 424
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	129, 255
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	323, 355, 530
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	157, 250
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	128, 267, 297, 539, 549, 566
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	51, 416, 547
MalI	GATC	2 cut(s)	159, 252
MboI	GATC	2 cut(s)	157, 250
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	7 cut(s)	153, 162, 169, 207, 378, 396, 453
MlyI	GAGTC	2 cut(s)	24, 113
MnlI	CCTC	4 cut(s)	122, 124, 372, 531
MroI	TCCGGA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	2 cut(s)	157, 250
NlaIII	CATG	3 cut(s)	323, 355, 530
NlaIV	GGNNCC	3 cut(s)	141, 252, 282
NmuCI	GTSAC	3 cut(s)	51, 416, 547
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	23, 112
PmaCI	CACGTG	1 cut(s)	219
PmlI	CACGTG	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	23, 112
Ppu21I	YACGTR	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	552
PspCI	CACGTG	1 cut(s)	219
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	141, 252, 282
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	157, 250
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	2 cut(s)	24, 113
ScrFI	CCNGG	1 cut(s)	554
SetI	ASST	4 cut(s)	221, 271, 482, 513
SfaNI	GCATC	1 cut(s)	317
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	7 cut(s)	153, 162, 169, 207, 378, 396, 453
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	221
TasI	AATT	7 cut(s)	153, 162, 169, 207, 378, 396, 453
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	3 cut(s)	51, 416, 547
Tsp45I	GTSAC	3 cut(s)	51, 416, 547
TspDTI	ATGAA	7 cut(s)	239, 257, 340, 382, 389, 443, 585
TspGWI	ACGGA	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.