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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32640 AT2G32640 |
| fragaria_vesca | FvH4_6g42610 FvH4_6g42610 |
| malus_domestica | MD09G1112100.v1.1 |
| prunus_persica | Prupe.3G212600_v2.0.a1 Prupe.3G212600_v2.0.a1 Prupe.3G212600_v2.0.a1 |
| pyrus_communis | pycom09g03660 |
| rosa_chinensis | RchiOBHm_Chr2g0158461 |
| rosa_laevigata | RLG00000021090 |
| rosa_multiflora | Rmu_sc0004855.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00091350 |
| rosa_rugosa | Rorug02G0469600 |
| rosa_samantha | Rh2AG535100 Rh2BG548500 Rh2CG518900 |
| rosa_wichuraiana | Rw2G044320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1720 |
| Acc36I | ACCTGC | 1 cut(s) | 1733 |
| AccB1I | GGYRCC | 1 cut(s) | 1335 |
| AccI | GTMKAC | 1 cut(s) | 233 |
| AccIII | TCCGGA | 1 cut(s) | 902 |
| AciI | CCGC | 7 cut(s) | 329, 623, 648, 1241, 1287, 1314, 1490 |
| AclWI | GGATC | 6 cut(s) | 196, 894, 933, 946, 1544, 1557 |
| AcsI | RAATTY | 3 cut(s) | 629, 871, 1581 |
| AcyI | GRCGYC | 1 cut(s) | 1717 |
| AfaI | GTAC | 6 cut(s) | 457, 486, 1397, 1628, 1681, 1703 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 30, 213, 1623 |
| AflII | CTTAAG | 1 cut(s) | 1432 |
| AflIII | ACRYGT | 1 cut(s) | 1632 |
| AgsI | TTSAA | 8 cut(s) | 20, 211, 611, 634, 767, 1454, 1529, 1574 |
| AjnI | CCWGG | 2 cut(s) | 292, 1692 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 455, 487 |
| Alw21I | GWGCWC | 6 cut(s) | 47, 91, 567, 949, 1019, 1512 |
| Alw26I | GTCTC | 2 cut(s) | 849, 1180 |
| AlwI | GGATC | 6 cut(s) | 196, 894, 933, 946, 1544, 1557 |
| Ama87I | CYCGRG | 1 cut(s) | 1544 |
| Aor13HI | TCCGGA | 1 cut(s) | 902 |
| AoxI | GGCC | 2 cut(s) | 55, 117 |
| ApaI | GGGCCC | 1 cut(s) | 59 |
| ApeKI | GCWGC | 3 cut(s) | 806, 1243, 1250 |
| ApoI | RAATTY | 3 cut(s) | 629, 871, 1581 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1463, 1495 |
| AspLEI | GCGC | 2 cut(s) | 398, 1742 |
| AspS9I | GGNCC | 5 cut(s) | 55, 56, 118, 220, 1061 |
| AsuHPI | GGTGA | 5 cut(s) | 529, 614, 677, 1289, 1290 |
| AsuNHI | GCTAGC | 1 cut(s) | 1283 |
| AvaI | CYCGRG | 1 cut(s) | 1544 |
| AvaII | GGWCC | 2 cut(s) | 220, 1061 |
| BaeGI | GKGCMC | 1 cut(s) | 59 |
| BamHI | GGATCC | 2 cut(s) | 938, 1549 |
| BanI | GGYRCC | 1 cut(s) | 1335 |
| BanII | GRGCYC | 5 cut(s) | 59, 91, 567, 1019, 1512 |
| BauI | CACGAG | 1 cut(s) | 948 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| Bbv12I | GWGCWC | 6 cut(s) | 47, 91, 567, 949, 1019, 1512 |
| BbvI | GCAGC | 3 cut(s) | 818, 1230, 1262 |
| BccI | CCATC | 1 cut(s) | 911 |
| BciT130I | CCWGG | 2 cut(s) | 294, 1694 |
| BclI | TGATCA | 2 cut(s) | 519, 526 |
| BcoDI | GTCTC | 2 cut(s) | 849, 1180 |
| BfaI | CTAG | 3 cut(s) | 749, 1284, 1332 |
| BfmI | CTRYAG | 4 cut(s) | 384, 772, 1065, 1659 |
| BfrI | CTTAAG | 1 cut(s) | 1432 |
| BfuAI | ACCTGC | 1 cut(s) | 1733 |
| BisI | GCNGC | 5 cut(s) | 624, 649, 807, 1244, 1251 |
| BlsI | GCNGC | 5 cut(s) | 625, 650, 808, 1245, 1252 |
| Bme1390I | CCNGG | 2 cut(s) | 294, 1694 |
| Bme18I | GGWCC | 2 cut(s) | 220, 1061 |
| BmeT110I | CYCGRG | 1 cut(s) | 1544 |
| BmgT120I | GGNCC | 5 cut(s) | 55, 56, 118, 220, 1061 |
| BmiI | GGNNCC | 5 cut(s) | 57, 120, 940, 1337, 1551 |
| BmrFI | CCNGG | 2 cut(s) | 294, 1694 |
| BmsI | GCATC | 7 cut(s) | 86, 635, 793, 795, 850, 1146, 1270 |
| BmtI | GCTAGC | 1 cut(s) | 1287 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| BpmI | CTGGAG | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 2 cut(s) | 538, 1742 |
| BsaHI | GRCGYC | 1 cut(s) | 1717 |
| BsaJI | CCNNGG | 1 cut(s) | 1692 |
| BsaWI | WCCGGW | 1 cut(s) | 902 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 912, 942 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 30, 213, 1623 |
| Bse1I | ACTGG | 3 cut(s) | 972, 1553, 1604 |
| Bse3DI | GCAATG | 4 cut(s) | 378, 870, 1377, 1467 |
| BseAI | TCCGGA | 1 cut(s) | 902 |
| BseBI | CCWGG | 2 cut(s) | 294, 1694 |
| BseDI | CCNNGG | 1 cut(s) | 1692 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 30, 213, 1623 |
| BseMI | GCAATG | 4 cut(s) | 378, 870, 1377, 1467 |
| BseMII | CTCAG | 4 cut(s) | 83, 128, 149, 1032 |
| BseNI | ACTGG | 3 cut(s) | 972, 1553, 1604 |
| BseRI | GAGGAG | 1 cut(s) | 1092 |
| BseSI | GKGCMC | 1 cut(s) | 59 |
| BseXI | GCAGC | 3 cut(s) | 818, 1230, 1262 |
| BseYI | CCCAGC | 1 cut(s) | 1621 |
| BshFI | GGCC | 2 cut(s) | 57, 119 |
| BshNI | GGYRCC | 1 cut(s) | 1335 |
| BsiHKAI | GWGCWC | 6 cut(s) | 47, 91, 567, 949, 1019, 1512 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1544 |
| BsiSI | CCGG | 1 cut(s) | 903 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 30, 213, 1623 |
| BsmAI | GTCTC | 2 cut(s) | 849, 1180 |
| BsmBI | CGTCTC | 1 cut(s) | 849 |
| BsmI | GAATGC | 1 cut(s) | 288 |
| BsnI | GGCC | 2 cut(s) | 57, 119 |
| BsoBI | CYCGRG | 1 cut(s) | 1544 |
| Bsp120I | GGGCCC | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 7 cut(s) | 47, 59, 91, 567, 949, 1019, 1512 |
| Bsp13I | TCCGGA | 1 cut(s) | 902 |
| Bsp143I | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| BspACI | CCGC | 7 cut(s) | 329, 623, 648, 1241, 1287, 1314, 1490 |
| BspANI | GGCC | 2 cut(s) | 57, 119 |
| BspCNI | CTCAG | 4 cut(s) | 82, 127, 148, 1031 |
| BspEI | TCCGGA | 1 cut(s) | 902 |
| BspHI | TCATGA | 1 cut(s) | 1760 |
| BspLI | GGNNCC | 5 cut(s) | 57, 120, 940, 1337, 1551 |
| BspMI | ACCTGC | 1 cut(s) | 1733 |
| BspOI | GCTAGC | 1 cut(s) | 1287 |
| BspPI | GGATC | 6 cut(s) | 196, 894, 933, 946, 1544, 1557 |
| BspT107I | GGYRCC | 1 cut(s) | 1335 |
| BspTI | CTTAAG | 1 cut(s) | 1432 |
| BsrDI | GCAATG | 4 cut(s) | 378, 870, 1377, 1467 |
| BsrI | ACTGG | 3 cut(s) | 972, 1553, 1604 |
| BssECI | CCNNGG | 1 cut(s) | 1692 |
| BssMI | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| BssNI | GRCGYC | 1 cut(s) | 1717 |
| BssSI | CACGAG | 1 cut(s) | 948 |
| Bst2BI | CACGAG | 1 cut(s) | 948 |
| Bst2UI | CCWGG | 2 cut(s) | 294, 1694 |
| Bst4CI | ACNGT | 7 cut(s) | 203, 256, 460, 489, 776, 1134, 1272 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstACI | GRCGYC | 1 cut(s) | 1717 |
| BstAFI | CTTAAG | 1 cut(s) | 1432 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1466 |
| BstC8I | GCNNGC | 6 cut(s) | 107, 708, 1241, 1248, 1285, 1535 |
| BstDEI | CTNAG | 5 cut(s) | 69, 114, 135, 1018, 1559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 211 |
| BstHHI | GCGC | 2 cut(s) | 398, 1742 |
| BstKTI | GATC | 8 cut(s) | 191, 316, 522, 529, 902, 941, 1072, 1552 |
| BstMAI | GTCTC | 2 cut(s) | 849, 1180 |
| BstMBI | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 326, 395, 712, 1049, 1466 |
| BstNI | CCWGG | 2 cut(s) | 294, 1694 |
| BstNSI | RCATGY | 2 cut(s) | 1426, 1537 |
| BstSCI | CCNGG | 2 cut(s) | 292, 1692 |
| BstSFI | CTRYAG | 4 cut(s) | 384, 772, 1065, 1659 |
| BstSLI | GKGCMC | 1 cut(s) | 59 |
| BstV1I | GCAGC | 3 cut(s) | 818, 1230, 1262 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| BstX2I | RGATCY | 3 cut(s) | 899, 938, 1549 |
| BstYI | RGATCY | 3 cut(s) | 899, 938, 1549 |
| BsuRI | GGCC | 2 cut(s) | 57, 119 |
| BtsIMutI | CAGTG | 4 cut(s) | 165, 208, 781, 979 |
| BveI | ACCTGC | 1 cut(s) | 1733 |
| Cac8I | GCNNGC | 6 cut(s) | 107, 708, 1241, 1248, 1285, 1535 |
| CciI | TCATGA | 1 cut(s) | 1760 |
| CfoI | GCGC | 2 cut(s) | 398, 1742 |
| Cfr13I | GGNCC | 5 cut(s) | 55, 56, 118, 220, 1061 |
| Csp6I | GTAC | 6 cut(s) | 456, 485, 1396, 1627, 1680, 1702 |
| CviAII | CATG | 7 cut(s) | 568, 760, 1423, 1443, 1534, 1618, 1761 |
| CviQI | GTAC | 6 cut(s) | 456, 485, 1396, 1627, 1680, 1702 |
| DdeI | CTNAG | 5 cut(s) | 69, 114, 135, 1018, 1559 |
| DpnI | GATC | 8 cut(s) | 190, 315, 521, 528, 901, 940, 1071, 1551 |
| DpnII | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| EciI | GGCGGA | 1 cut(s) | 1479 |
| Ecl136II | GAGCTC | 4 cut(s) | 89, 565, 1017, 1510 |
| Eco24I | GRGCYC | 5 cut(s) | 59, 91, 567, 1019, 1512 |
| Eco32I | GATATC | 1 cut(s) | 670 |
| Eco47I | GGWCC | 2 cut(s) | 220, 1061 |
| Eco53kI | GAGCTC | 4 cut(s) | 89, 565, 1017, 1510 |
| Eco88I | CYCGRG | 1 cut(s) | 1544 |
| EcoICRI | GAGCTC | 4 cut(s) | 89, 565, 1017, 1510 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 211 |
| EcoO109I | RGGNCCY | 2 cut(s) | 55, 118 |
| EcoRI | GAATTC | 1 cut(s) | 1581 |
| EcoRII | CCWGG | 2 cut(s) | 292, 1692 |
| EcoRV | GATATC | 1 cut(s) | 670 |
| EcoT38I | GRGCYC | 5 cut(s) | 59, 91, 567, 1019, 1512 |
| Esp3I | CGTCTC | 1 cut(s) | 849 |
| FaeI | CATG | 7 cut(s) | 571, 763, 1426, 1446, 1537, 1621, 1764 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1164, 1196 |
| FatI | CATG | 7 cut(s) | 567, 759, 1422, 1442, 1533, 1617, 1760 |
| FauI | CCCGC | 1 cut(s) | 1248 |
| FbaI | TGATCA | 2 cut(s) | 519, 526 |
| FblI | GTMKAC | 1 cut(s) | 233 |
| Fnu4HI | GCNGC | 5 cut(s) | 624, 649, 807, 1244, 1251 |
| FriOI | GRGCYC | 5 cut(s) | 59, 91, 567, 1019, 1512 |
| Fsp4HI | GCNGC | 5 cut(s) | 624, 649, 807, 1244, 1251 |
| FspBI | CTAG | 3 cut(s) | 749, 1284, 1332 |
| GlaI | GCGC | 2 cut(s) | 397, 1741 |
| GluI | GCNGC | 5 cut(s) | 624, 649, 807, 1244, 1251 |
| GsaI | CCCAGC | 1 cut(s) | 1625 |
| GsuI | CTGGAG | 1 cut(s) | 112 |
| HaeIII | GGCC | 2 cut(s) | 57, 119 |
| HapII | CCGG | 1 cut(s) | 903 |
| HhaI | GCGC | 2 cut(s) | 398, 1742 |
| Hin1I | GRCGYC | 1 cut(s) | 1717 |
| Hin1II | CATG | 7 cut(s) | 571, 763, 1426, 1446, 1537, 1621, 1764 |
| Hin6I | GCGC | 2 cut(s) | 396, 1740 |
| HinP1I | GCGC | 2 cut(s) | 396, 1740 |
| HincII | GTYRAC | 1 cut(s) | 679 |
| HindII | GTYRAC | 1 cut(s) | 679 |
| HindIII | AAGCTT | 2 cut(s) | 713, 1324 |
| HinfI | GANTC | 7 cut(s) | 112, 297, 372, 733, 756, 1391, 1478 |
| HpaII | CCGG | 1 cut(s) | 903 |
| HphI | GGTGA | 5 cut(s) | 529, 614, 677, 1289, 1290 |
| Hpy166II | GTNNAC | 4 cut(s) | 234, 679, 1089, 1682 |
| Hpy188I | TCNGA | 9 cut(s) | 42, 72, 138, 313, 531, 587, 1021, 1322, 1413 |
| Hpy8I | GTNNAC | 4 cut(s) | 234, 679, 1089, 1682 |
| Hpy99I | CGWCG | 1 cut(s) | 1719 |
| HpyAV | CCTTC | 5 cut(s) | 593, 655, 761, 900, 1000 |
| HpyCH4III | ACNGT | 7 cut(s) | 203, 256, 460, 489, 776, 1134, 1272 |
| HpyCH4IV | ACGT | 2 cut(s) | 1634, 1717 |
| HpyCH4V | TGCA | 6 cut(s) | 83, 109, 806, 863, 1469, 1537 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 326, 395, 712, 1049, 1466 |
| HpyF3I | CTNAG | 5 cut(s) | 69, 114, 135, 1018, 1559 |
| HpySE526I | ACGT | 2 cut(s) | 1634, 1717 |
| Hsp92I | GRCGYC | 1 cut(s) | 1717 |
| Hsp92II | CATG | 7 cut(s) | 571, 763, 1426, 1446, 1537, 1621, 1764 |
| HspAI | GCGC | 2 cut(s) | 396, 1740 |
| Kpn2I | TCCGGA | 1 cut(s) | 902 |
| Ksp22I | TGATCA | 2 cut(s) | 519, 526 |
| Kzo9I | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| LmnI | GCTCC | 3 cut(s) | 1014, 1105, 1515 |
| Lsp1109I | GCAGC | 3 cut(s) | 818, 1230, 1262 |
| LweI | GCATC | 7 cut(s) | 86, 635, 793, 795, 850, 1146, 1270 |
| MaeI | CTAG | 3 cut(s) | 749, 1284, 1332 |
| MaeII | ACGT | 2 cut(s) | 1634, 1717 |
| MaeIII | GTNAC | 3 cut(s) | 602, 616, 1232 |
| MalI | GATC | 8 cut(s) | 190, 315, 521, 528, 901, 940, 1071, 1551 |
| MboI | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| MfeI | CAATTG | 1 cut(s) | 882 |
| MflI | RGATCY | 3 cut(s) | 899, 938, 1549 |
| MhlI | GDGCHC | 7 cut(s) | 47, 59, 91, 567, 949, 1019, 1512 |
| MluCI | AATT | 9 cut(s) | 307, 451, 629, 855, 871, 882, 1151, 1522, 1581 |
| MlyI | GAGTC | 5 cut(s) | 106, 291, 765, 1385, 1487 |
| MmeI | TCCRAC | 2 cut(s) | 916, 1558 |
| MroI | TCCGGA | 1 cut(s) | 902 |
| MseI | TTAA | 3 cut(s) | 350, 1257, 1433 |
| MspA1I | CMGCKG | 3 cut(s) | 809, 1052, 1243 |
| MspCI | CTTAAG | 1 cut(s) | 1432 |
| MspI | CCGG | 1 cut(s) | 903 |
| MspR9I | CCNGG | 2 cut(s) | 294, 1694 |
| MunI | CAATTG | 1 cut(s) | 882 |
| Mva1269I | GAATGC | 1 cut(s) | 288 |
| MvaI | CCWGG | 2 cut(s) | 294, 1694 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 326, 395, 712, 1049, 1466 |
| NdeII | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| NheI | GCTAGC | 1 cut(s) | 1283 |
| NlaIII | CATG | 7 cut(s) | 571, 763, 1426, 1446, 1537, 1621, 1764 |
| NlaIV | GGNNCC | 5 cut(s) | 57, 120, 940, 1337, 1551 |
| NmuCI | GTSAC | 2 cut(s) | 602, 1232 |
| NspI | RCATGY | 2 cut(s) | 1426, 1537 |
| PaeI | GCATGC | 1 cut(s) | 1537 |
| PagI | TCATGA | 1 cut(s) | 1760 |
| PctI | GAATGC | 1 cut(s) | 288 |
| PfeI | GAWTC | 2 cut(s) | 372, 733 |
| PfoI | TCCNGGA | 1 cut(s) | 292 |
| PkrI | GCNGC | 5 cut(s) | 625, 650, 808, 1245, 1252 |
| PleI | GAGTC | 5 cut(s) | 106, 291, 764, 1385, 1486 |
| PpsI | GAGTC | 5 cut(s) | 106, 291, 764, 1385, 1486 |
| Psp124BI | GAGCTC | 4 cut(s) | 91, 567, 1019, 1512 |
| Psp6I | CCWGG | 2 cut(s) | 292, 1692 |
| PspFI | CCCAGC | 1 cut(s) | 1621 |
| PspGI | CCWGG | 2 cut(s) | 292, 1692 |
| PspN4I | GGNNCC | 5 cut(s) | 57, 120, 940, 1337, 1551 |
| PspOMI | GGGCCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 5 cut(s) | 55, 56, 118, 220, 1061 |
| PsuI | RGATCY | 3 cut(s) | 899, 938, 1549 |
| PvuII | CAGCTG | 2 cut(s) | 809, 1052 |
| RsaI | GTAC | 6 cut(s) | 457, 486, 1397, 1628, 1681, 1703 |
| RsaNI | GTAC | 6 cut(s) | 456, 485, 1396, 1627, 1680, 1702 |
| SacI | GAGCTC | 4 cut(s) | 91, 567, 1019, 1512 |
| SaqAI | TTAA | 3 cut(s) | 350, 1257, 1433 |
| SatI | GCNGC | 5 cut(s) | 624, 649, 807, 1244, 1251 |
| Sau3AI | GATC | 8 cut(s) | 188, 313, 519, 526, 899, 938, 1069, 1549 |
| Sau96I | GGNCC | 5 cut(s) | 55, 56, 118, 220, 1061 |
| SchI | GAGTC | 5 cut(s) | 106, 291, 765, 1385, 1487 |
| ScrFI | CCNGG | 2 cut(s) | 294, 1694 |
| SduI | GDGCHC | 7 cut(s) | 47, 59, 91, 567, 949, 1019, 1512 |
| SfaNI | GCATC | 7 cut(s) | 86, 635, 793, 795, 850, 1146, 1270 |
| SfcI | CTRYAG | 4 cut(s) | 384, 772, 1065, 1659 |
| SinI | GGWCC | 2 cut(s) | 220, 1061 |
| SmlI | CTYRAG | 3 cut(s) | 553, 1432, 1721 |
| SmoI | CTYRAG | 3 cut(s) | 553, 1432, 1721 |
| SphI | GCATGC | 1 cut(s) | 1537 |
| Sse9I | AATT | 9 cut(s) | 307, 451, 629, 855, 871, 882, 1151, 1522, 1581 |
| SsiI | CCGC | 7 cut(s) | 329, 623, 648, 1241, 1287, 1314, 1490 |
| SspI | AATATT | 1 cut(s) | 1145 |
| SspMI | CTAG | 3 cut(s) | 749, 1284, 1332 |
| SstI | GAGCTC | 4 cut(s) | 91, 567, 1019, 1512 |
| StyD4I | CCNGG | 2 cut(s) | 292, 1692 |
| TaaI | ACNGT | 7 cut(s) | 203, 256, 460, 489, 776, 1134, 1272 |
| TaiI | ACGT | 2 cut(s) | 1637, 1720 |
| TaqI | TCGA | 4 cut(s) | 91, 284, 409, 423 |
| TasI | AATT | 9 cut(s) | 307, 451, 629, 855, 871, 882, 1151, 1522, 1581 |
| TatI | WGTACW | 3 cut(s) | 455, 484, 1679 |
| TauI | GCSGC | 2 cut(s) | 626, 651 |
| TfiI | GAWTC | 2 cut(s) | 372, 733 |
| Tru1I | TTAA | 3 cut(s) | 350, 1257, 1433 |
| Tru9I | TTAA | 3 cut(s) | 350, 1257, 1433 |
| TscAI | CASTG | 4 cut(s) | 165, 208, 781, 979 |
| TseFI | GTSAC | 2 cut(s) | 602, 1232 |
| TseI | GCWGC | 3 cut(s) | 806, 1243, 1250 |
| Tsp45I | GTSAC | 2 cut(s) | 602, 1232 |
| TspDTI | ATGAA | 8 cut(s) | 186, 367, 813, 984, 1296, 1380, 1431, 1489 |
| TspGWI | ACGGA | 2 cut(s) | 13, 1371 |
| TspRI | CASTG | 4 cut(s) | 165, 208, 781, 979 |
| Vha464I | CTTAAG | 1 cut(s) | 1432 |
| VpaK11BI | GGWCC | 2 cut(s) | 220, 1061 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 211 |
| XapI | RAATTY | 3 cut(s) | 629, 871, 1581 |
| XceI | RCATGY | 2 cut(s) | 1426, 1537 |
| XmiI | GTMKAC | 1 cut(s) | 233 |
| XspI | CTAG | 3 cut(s) | 749, 1284, 1332 |
| ZraI | GACGTC | 1 cut(s) | 1718 |