Rroxscaffold_2G00091350

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
12917219 .. 12921427
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091350.1

Sequence Viewer

Length: 1638 bp
ATGGAGAGTTTGCCGGTGAGTAGTGAAGTTGGTGGTGCTGGTGGAGCTTACTCATATAGTGCTTTGAAGAGGCTGGATCAAGTTTGGTCTAGAATTTGCAAAGCTAAAACCGTTGTGGAAGAACCAAAGGAAGTAGTTTCGAATTTTCCTGGTTTGCTTAGGAATTCTGATCTGGCTGAAAAAGTGGAGGATACATTTGATGTGTTCATTTGTGGTGGAACTCTGGGGATCTTCATAGCAACAGCATTGTGTGCCAAAGGTCTTCGAGTTGGCGTTGTGGAAAGAAATGTACTAAAAGGGAGGGAACAGGAGTGGAATATCTCGAGGAAAGAGCTCTTGGAATTTGTAGAAATTGGAATTCTTGCAGAAGATGAGATTGAACAAGCTACAGCGATGAAATTCAATCCTAACAGATGTGGATTTGAGGGGAAGGGTGATATCTGGGTTGAAGACATTCTTAATCTTGGTGTTTCACCAGTAAAGCTAATAGAGATTGTGAAGAATCGTTTTATTTCTCTAGGTGGAGTCGTATTGGAAGGCTACAGTATGTCCAGCATTTCCATTTATGAAGATGCAGCTGTCTTGCAACTCGGTGAGGGAAAGATTTTGTCATCCCGCCTCGTCATTGATGCAATGGGGAATTTCTCTCCAGTTATAAGATCAGGTAGGAAGCCAGATGGTGTTTGCCTTGTTGTTGGATCTTGTGCTCGTGGGTTCAAGAATAACTCTGACAGTGATGTTATATATAGTAGTTCGTCGGTGAAGAAGGTCGGGGCCTCTGCAGCACAATTCTTTTGGGAGGCATTTCCAGCTGGTTCAGGTCCTACAGATCGTACAACTTATATGTTCACTTATGTTGATCCTCAACCCCAGTCGCCAAAACTGGAAGAATTATTAGAAGAATATTGGAAACTGATGCCCGAATATCAGGGAGTCTCTCTTGATGAGTTGGAGATACAGAGGGTTCTATATGGTATTTTCCCTACATACCGTGACAGCCCACTGCCTGCAGCTTTTAATCGTGTTTTACAGGTGTTTGGTGATGCTAGTGGAATACAATCACCTGTTTCGTTTGGTGGCTTTGGAAGCTTGACTAGGCACCTTAATAGACTGTCAACAGGAATATACGAAGCAATTAATGGTGATTTTCTTGACTCACACAACTTGTCCCTGCTGAATCCTTACATGGTTTGTGTCTCTCTGATATCTGTTCCCAACTTAAGTTCTTCATGGTTGTTTCAAAGAGCAATGTCAGCAAAAGAACCGTCTAATGTGTCACCAGATTTTATCAATGAGCTTCTGTATGCAAATTTTCAGAGTATGCAGAAGCTTGGGGATCCAGTACTCAGACCATTTCTTCAGGATGTTGTACAGTTTGGGCCTCTTACCAAGACATTAGGCCTAGTCATGTTAAATAAACCTCAAATTATCCCATCAATATTCAAGCAGGTTGGGATTCCTGTACTTCTTGACTGGTCTGGACATTTTTTCATGCTTGGATACTATACGTTACTCTCAACTTTTGCCGACCCTGTAGTGAGGCCTTTATTAAGTGCACTACCGCCGGAGATGAAGTATGGGTGGAAGAGACGTCTTGAGGCTTGGAAATATGGTGCTGGTTTAGATTACAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

60.23

Weight (kDa)

5.31

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 656
AatII GACGTC 1 cut(s) 1594
Acc36I ACCTGC 1 cut(s) 1438
AccB1I GGYRCC 1 cut(s) 1098
AciI CCGC 2 cut(s) 616, 1562
AclWI GGATC 6 cut(s) 84, 236, 706, 854, 1331, 1344
AcsI RAATTY 8 cut(s) 93, 142, 163, 341, 357, 398, 640, 1309
AcuI CTGAAG 1 cut(s) 1343
AcyI GRCGYC 1 cut(s) 1591
AfaI GTAC 5 cut(s) 291, 835, 1344, 1371, 1464
AflII CTTAAG 1 cut(s) 1219
AgsI TTSAA 7 cut(s) 67, 380, 403, 449, 718, 1241, 1444
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
Alw21I GWGCWC 3 cut(s) 336, 709, 1558
Alw26I GTCTC 3 cut(s) 940, 1201, 1582
Alw44I GTGCAC 1 cut(s) 1554
AlwI GGATC 6 cut(s) 84, 236, 706, 854, 1331, 1344
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 4 cut(s) 774, 1379, 1399, 1541
ApaLI GTGCAC 1 cut(s) 1554
ApeKI GCWGC 3 cut(s) 575, 782, 1010
ApoI RAATTY 8 cut(s) 93, 142, 163, 341, 357, 398, 640, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
AseI ATTAAT 1 cut(s) 1137
Asp700I GAANNNNTTC 1 cut(s) 453
AspS9I GGNCC 3 cut(s) 774, 821, 1379
AsuHPI GGTGA 9 cut(s) 28, 446, 465, 605, 772, 1052, 1053, 1154, 1269
AsuII TTCGAA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 1558
BamHI GGATCC 1 cut(s) 1336
BanI GGYRCC 1 cut(s) 1098
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 2 cut(s) 254, 456
Bbv12I GWGCWC 3 cut(s) 336, 709, 1558
BbvI GCAGC 3 cut(s) 587, 794, 1022
BccI CCATC 2 cut(s) 671, 1441
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 2 cut(s) 184, 1493
BcoDI GTCTC 3 cut(s) 940, 1201, 1582
BfaI CTAG 5 cut(s) 90, 518, 1047, 1095, 1403
BfmI CTRYAG 6 cut(s) 387, 541, 780, 825, 1008, 1533
BfrI CTTAAG 1 cut(s) 1219
BfuAI ACCTGC 1 cut(s) 1438
BfuI GTATCC 2 cut(s) 184, 1493
BisI GCNGC 3 cut(s) 576, 783, 1011
BlsI GCNGC 3 cut(s) 577, 784, 1012
BmcAI AGTACT 1 cut(s) 1344
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 821
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 774, 821, 1379
BmiI GGNNCC 3 cut(s) 775, 1100, 1338
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 4 cut(s) 562, 619, 906, 1033
BmuI ACTGGG 1 cut(s) 865
BpiI GAAGAC 2 cut(s) 254, 456
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 1616
BsaHI GRCGYC 1 cut(s) 1591
BsaXI ACNNNNNCTCC 2 cut(s) 1559, 1589
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 6 cut(s) 476, 650, 871, 888, 1340, 1478
Bse3DI GCAATG 2 cut(s) 639, 1254
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 611, 1369
BseMI GCAATG 2 cut(s) 639, 1254
BseMII CTCAG 1 cut(s) 1360
BseNI ACTGG 6 cut(s) 476, 650, 871, 888, 1340, 1478
BseSI GKGCMC 1 cut(s) 1558
BseXI GCAGC 3 cut(s) 587, 794, 1022
BshFI GGCC 4 cut(s) 776, 1381, 1401, 1543
BshNI GGYRCC 1 cut(s) 1098
BsiHKAI GWGCWC 3 cut(s) 336, 709, 1558
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 14, 1565
BslFI GGGAC 1 cut(s) 1153
BsmAI GTCTC 3 cut(s) 940, 1201, 1582
BsmBI CGTCTC 1 cut(s) 1582
BsmFI GGGAC 1 cut(s) 1153
BsnI GGCC 4 cut(s) 776, 1381, 1401, 1543
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 336, 709, 1558
Bsp1407I TGTACA 1 cut(s) 1369
Bsp143I GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
BspACI CCGC 2 cut(s) 616, 1562
BspANI GGCC 4 cut(s) 776, 1381, 1401, 1543
BspCNI CTCAG 1 cut(s) 1359
BspLI GGNNCC 3 cut(s) 775, 1100, 1338
BspMAI CTGCAG 2 cut(s) 784, 1012
BspMI ACCTGC 1 cut(s) 1438
BspPI GGATC 6 cut(s) 84, 236, 706, 854, 1331, 1344
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 1098
BspTI CTTAAG 1 cut(s) 1219
BsrDI GCAATG 2 cut(s) 639, 1254
BsrFI RCCGGY 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 1369
BsrI ACTGG 6 cut(s) 476, 650, 871, 888, 1340, 1478
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
BssNI GRCGYC 1 cut(s) 1591
BssSI CACGAG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 7 cut(s) 112, 545, 734, 992, 1113, 1266, 1374
Bst6I CTCTTC 2 cut(s) 62, 1580
BstACI GRCGYC 1 cut(s) 1591
BstAFI CTTAAG 1 cut(s) 1219
BstAPI GCANNNNNTGC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 1369
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 2 cut(s) 158, 1346
BstF5I GGATG 2 cut(s) 611, 1369
BstKTI GATC 8 cut(s) 79, 172, 231, 662, 701, 832, 862, 1339
BstMAI GTCTC 3 cut(s) 940, 1201, 1582
BstMBI GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
BstMWI GCNNNNNNNGC 6 cut(s) 44, 251, 782, 809, 1086, 1253
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 6 cut(s) 387, 541, 780, 825, 1008, 1533
BstSLI GKGCMC 1 cut(s) 1558
BstV1I GCAGC 3 cut(s) 587, 794, 1022
BstV2I GAAGAC 2 cut(s) 254, 456
BstX2I RGATCY 3 cut(s) 228, 698, 1336
BstYI RGATCY 3 cut(s) 228, 698, 1336
BsuI GTATCC 2 cut(s) 184, 1493
BsuRI GGCC 4 cut(s) 776, 1381, 1401, 1543
BtgZI GCGATG 1 cut(s) 407
BtsCI GGATG 2 cut(s) 611, 1369
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 2 cut(s) 739, 1001
BveI ACCTGC 1 cut(s) 1438
Cac8I GCNNGC 1 cut(s) 1008
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 3 cut(s) 774, 821, 1379
Csp6I GTAC 5 cut(s) 290, 834, 1343, 1370, 1463
CviAII CATG 4 cut(s) 1186, 1230, 1408, 1492
CviQI GTAC 5 cut(s) 290, 834, 1343, 1370, 1463
DdeI CTNAG 2 cut(s) 158, 1346
DpnI GATC 8 cut(s) 78, 171, 230, 661, 700, 831, 861, 1338
DpnII GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
Eam1104I CTCTTC 2 cut(s) 62, 1580
EarI CTCTTC 2 cut(s) 62, 1580
Ecl136II GAGCTC 1 cut(s) 334
Eco147I AGGCCT 2 cut(s) 1401, 1543
Eco24I GRGCYC 1 cut(s) 336
Eco32I GATATC 2 cut(s) 439, 1206
Eco47I GGWCC 1 cut(s) 821
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 1343
Eco88I CYCGRG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 774, 821
EcoRI GAATTC 2 cut(s) 163, 357
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 2 cut(s) 439, 1206
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 1582
FaeI CATG 4 cut(s) 1189, 1233, 1411, 1495
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 1153
FatI CATG 4 cut(s) 1185, 1229, 1407, 1491
FauI CCCGC 1 cut(s) 623
Fnu4HI GCNGC 3 cut(s) 576, 783, 1011
FokI GGATG 2 cut(s) 598, 1376
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 576, 783, 1011
FspBI CTAG 5 cut(s) 90, 518, 1047, 1095, 1403
GluI GCNGC 3 cut(s) 576, 783, 1011
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 4 cut(s) 776, 1381, 1401, 1543
HapII CCGG 2 cut(s) 14, 1565
Hin1I GRCGYC 1 cut(s) 1591
Hin1II CATG 4 cut(s) 1189, 1233, 1411, 1495
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HindIII AAGCTT 2 cut(s) 1087, 1328
HinfI GANTC 6 cut(s) 502, 525, 933, 1154, 1177, 1456
HpaII CCGG 2 cut(s) 14, 1565
HphI GGTGA 9 cut(s) 28, 446, 465, 605, 772, 1052, 1053, 1154, 1269
Hpy166II GTNNAC 3 cut(s) 849, 1116, 1556
Hpy188I TCNGA 5 cut(s) 169, 730, 1203, 1317, 1349
Hpy188III TCNNGA 9 cut(s) 90, 322, 718, 941, 1151, 1361, 1469, 1479, 1595
Hpy8I GTNNAC 3 cut(s) 849, 1116, 1556
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 3 cut(s) 424, 530, 760
HpyCH4III ACNGT 7 cut(s) 112, 545, 734, 992, 1113, 1266, 1374
HpyCH4IV ACGT 2 cut(s) 1508, 1591
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 251, 782, 809, 1086, 1253
HpyF3I CTNAG 2 cut(s) 158, 1346
HpySE526I ACGT 2 cut(s) 1508, 1591
Hsp92I GRCGYC 1 cut(s) 1591
Hsp92II CATG 4 cut(s) 1189, 1233, 1411, 1495
Kzo9I GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 3 cut(s) 587, 794, 1022
LweI GCATC 4 cut(s) 562, 619, 906, 1033
MaeI CTAG 5 cut(s) 90, 518, 1047, 1095, 1403
MaeII ACGT 2 cut(s) 1508, 1591
MaeIII GTNAC 3 cut(s) 992, 1275, 1509
MalI GATC 8 cut(s) 78, 171, 230, 661, 700, 831, 861, 1338
MboI GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
MflI RGATCY 3 cut(s) 228, 698, 1336
MhlI GDGCHC 3 cut(s) 336, 709, 1558
MlyI GAGTC 3 cut(s) 534, 942, 1148
MmeI TCCRAC 2 cut(s) 676, 930
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 7 cut(s) 459, 1017, 1104, 1137, 1220, 1412, 1550
MspA1I CMGCKG 2 cut(s) 578, 812
MspCI CTTAAG 1 cut(s) 1219
MspI CCGG 2 cut(s) 14, 1565
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 6 cut(s) 44, 251, 782, 809, 1086, 1253
NdeII GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
NlaIII CATG 4 cut(s) 1189, 1233, 1411, 1495
NlaIV GGNNCC 3 cut(s) 775, 1100, 1338
NmuCI GTSAC 2 cut(s) 992, 1275
NspV TTCGAA 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 322
PceI AGGCCT 2 cut(s) 1401, 1543
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 502, 1177, 1456
PkrI GCNGC 3 cut(s) 577, 784, 1012
PleI GAGTC 3 cut(s) 533, 941, 1148
PpsI GAGTC 3 cut(s) 533, 941, 1148
PpuMI RGGWCCY 1 cut(s) 821
PshBI ATTAAT 1 cut(s) 1137
PsiI TTATAA 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 775, 1100, 1338
PspPI GGNCC 3 cut(s) 774, 821, 1379
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 2 cut(s) 784, 1012
PsuI RGATCY 3 cut(s) 228, 698, 1336
PvuII CAGCTG 2 cut(s) 578, 812
RsaI GTAC 5 cut(s) 291, 835, 1344, 1371, 1464
RsaNI GTAC 5 cut(s) 290, 834, 1343, 1370, 1463
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 7 cut(s) 459, 1017, 1104, 1137, 1220, 1412, 1550
SatI GCNGC 3 cut(s) 576, 783, 1011
Sau3AI GATC 8 cut(s) 76, 169, 228, 659, 698, 829, 859, 1336
Sau96I GGNCC 3 cut(s) 774, 821, 1379
ScaI AGTACT 1 cut(s) 1344
SchI GAGTC 3 cut(s) 534, 942, 1148
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 336, 709, 1558
SfaNI GCATC 4 cut(s) 562, 619, 906, 1033
SfcI CTRYAG 6 cut(s) 387, 541, 780, 825, 1008, 1533
Sfr274I CTCGAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 1 cut(s) 821
SlaI CTCGAG 1 cut(s) 322
SmlI CTYRAG 3 cut(s) 322, 1219, 1595
SmoI CTYRAG 3 cut(s) 322, 1219, 1595
SseBI AGGCCT 2 cut(s) 1401, 1543
SsiI CCGC 2 cut(s) 616, 1562
SspI AATATT 2 cut(s) 905, 1440
SspMI CTAG 5 cut(s) 90, 518, 1047, 1095, 1403
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 2 cut(s) 1401, 1543
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 7 cut(s) 112, 545, 734, 992, 1113, 1266, 1374
TaiI ACGT 2 cut(s) 1511, 1594
TaqI TCGA 3 cut(s) 140, 265, 323
TatI WGTACW 4 cut(s) 289, 1342, 1369, 1462
TfiI GAWTC 3 cut(s) 502, 1177, 1456
Tru1I TTAA 7 cut(s) 459, 1017, 1104, 1137, 1220, 1412, 1550
Tru9I TTAA 7 cut(s) 459, 1017, 1104, 1137, 1220, 1412, 1550
TscAI CASTG 2 cut(s) 739, 1008
TseFI GTSAC 2 cut(s) 992, 1275
TseI GCWGC 3 cut(s) 575, 782, 1010
Tsp45I GTSAC 2 cut(s) 992, 1275
TspDTI ATGAA 7 cut(s) 196, 223, 410, 582, 1218, 1480, 1586
TspRI CASTG 2 cut(s) 739, 1008
Vha464I CTTAAG 1 cut(s) 1219
VneI GTGCAC 1 cut(s) 1554
VpaK11BI GGWCC 1 cut(s) 821
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 8 cut(s) 93, 142, 163, 341, 357, 398, 640, 1309
XbaI TCTAGA 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 5 cut(s) 90, 518, 1047, 1095, 1403
ZraI GACGTC 1 cut(s) 1592
ZrmI AGTACT 1 cut(s) 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.