pycom09g05040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017101
Physical Location & Seq
Forward (+)
3760433 .. 3761074
642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05040.1

Sequence Viewer

Length: 642 bp
ATGGATTCTATCAAGATTTCAAGCATCCAATCTGCAGGCCAATTCAAATTCAACCAATCCCACAAAGTGATCAAGTTTTTACTCTCTGTCTCAGTGCTTTCAATCTTGCTCTCTTACTCTTCTTTGATCTCTTTCTTTCTCCACTCCTTCAATTCCTTCACATTTTCTATAAATTTCGATAAGAACTACATGTTTTTACTTTGCAATGGACTCTTGGTGTTCATTGTGAAGAACTCCGGTCTCATTGGAACTTCTCCACCAGGAAGTTCCAATCTCACCTATGAAGAACACGATCTCAAGAGTGTCGAAAGCCGGCGAAAAGCAGTTGAATTGGCAGAAACCAAGGCAAAAAAATATCCAAAAGCGAAGGAAGAAGTTGTCAACGTCGAAATCGAGCAAGTGAAAGCAAGGGCAGATGAAATATTGGTGTCAGTAGAAGAAAAAAAAAGGGTTTTGATTGCTGCGGAGGAGGAAGATGAACGCTGCAGAAACAACTCTGTTGTGGTGGACGATCATGATTTGTATGAAGAGGAAGGGGTTGAAGTGCTGAGTGCAGAGGAGTTGAACAAGAAGTGTGATGATTTCATTAGGAGAATGAAAGAAGGAATTAAACTTGAAGTCCAACAGTCAATCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.26

Weight (kDa)

5.4

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04495 AT2G04515
fragaria_vesca FvH4_6g40700
prunus_persica Prupe.3G198500_v2.0.a1
pyrus_communis pycom09g05040 pycom17g10730
rosa_laevigata RLG00000020890
rosa_roxburghii Rroxscaffold_2G00093210
rosa_rugosa Rorug02G0451900
rosa_samantha Rh2BG529800 Rh2CG503500 Rh2DG538900
rosa_wichuraiana Rw2G042700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 464
AcsI RAATTY 2 cut(s) 47, 172
AdeI CACNNNGTG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 9 cut(s) 21, 46, 52, 102, 151, 329, 542, 565, 617
AjnI CCWGG 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 94, 245
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 461, 483
ApoI RAATTY 2 cut(s) 47, 172
AsuHPI GGTGA 1 cut(s) 268
BbvI GCAGC 2 cut(s) 448, 470
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 94, 245
BfmI CTRYAG 2 cut(s) 33, 484
BisI GCNGC 2 cut(s) 462, 484
BlsI GCNGC 2 cut(s) 463, 485
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 105, 539
BseRI GAGGAG 2 cut(s) 482, 572
BseXI GCAGC 2 cut(s) 448, 470
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 237, 313
BsmAI GTCTC 2 cut(s) 94, 245
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 4 cut(s) 69, 126, 292, 511
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 104, 540
BspHI TCATGA 1 cut(s) 514
BspMAI CTGCAG 2 cut(s) 37, 488
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 4 cut(s) 69, 126, 292, 511
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 2 cut(s) 124, 522
BstC8I GCNNGC 2 cut(s) 37, 314
BstDEI CTNAG 2 cut(s) 91, 548
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 4 cut(s) 72, 129, 295, 514
BstMAI GTCTC 2 cut(s) 94, 245
BstMBI GATC 4 cut(s) 69, 126, 292, 511
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 2 cut(s) 33, 484
BstV1I GCAGC 2 cut(s) 448, 470
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 37, 314
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 312
CviAII CATG 3 cut(s) 190, 515, 634
CviJI RGCY 2 cut(s) 39, 312
CviKI_1 RGCY 2 cut(s) 39, 312
DdeI CTNAG 2 cut(s) 91, 548
DpnI GATC 4 cut(s) 71, 128, 294, 513
DpnII GATC 4 cut(s) 69, 126, 292, 511
DraIII CACNNNGTG 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 124, 522
EarI CTCTTC 2 cut(s) 124, 522
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 193, 518, 637
FaiI YATR 6 cut(s) 170, 191, 282, 516, 525, 635
FatI CATG 3 cut(s) 189, 514, 633
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 462, 484
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 462, 484
GluI GCNGC 2 cut(s) 462, 484
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 237, 313
Hin1II CATG 3 cut(s) 193, 518, 637
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 5, 210
HpaII CCGG 2 cut(s) 237, 313
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 382, 508
Hpy188III TCNNGA 3 cut(s) 13, 298, 515
Hpy8I GTNNAC 2 cut(s) 382, 508
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 5 cut(s) 157, 166, 361, 527, 596
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 4 cut(s) 35, 204, 486, 554
HpyF3I CTNAG 2 cut(s) 91, 548
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 193, 518, 637
KroI GCCGGC 1 cut(s) 312
KroNI GCCGGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 126, 292, 511
LpnPI CCDG 5 cut(s) 21, 246, 250, 273, 326
Lsp1109I GCAGC 2 cut(s) 448, 470
LweI GCATC 1 cut(s) 33
MaeII ACGT 1 cut(s) 384
MalI GATC 4 cut(s) 71, 128, 294, 513
MboI GATC 4 cut(s) 69, 126, 292, 511
MboII GAAGA 7 cut(s) 111, 241, 296, 383, 449, 485, 539
MluCI AATT 6 cut(s) 41, 47, 151, 172, 329, 606
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 4 cut(s) 460, 463, 523, 550
MroNI GCCGGC 1 cut(s) 312
MseI TTAA 1 cut(s) 609
MspI CCGG 2 cut(s) 237, 313
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
NaeI GCCGGC 1 cut(s) 314
NdeII GATC 4 cut(s) 69, 126, 292, 511
NgoMIV GCCGGC 1 cut(s) 312
NlaIII CATG 3 cut(s) 193, 518, 637
NspI RCATGY 1 cut(s) 193
PagI TCATGA 1 cut(s) 514
PciI ACATGT 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 463, 485
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PscI ACATGT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PstI CTGCAG 2 cut(s) 37, 488
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 2 cut(s) 462, 484
Sau3AI GATC 4 cut(s) 69, 126, 292, 511
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 261
SetI ASST 2 cut(s) 281, 387
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 2 cut(s) 33, 484
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 6 cut(s) 41, 47, 151, 172, 329, 606
SsiI CCGC 1 cut(s) 464
SspI AATATT 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 177, 306, 387, 393
TasI AATT 6 cut(s) 41, 47, 151, 172, 329, 606
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 1 cut(s) 99
TseI GCWGC 2 cut(s) 461, 483
TspDTI ATGAA 7 cut(s) 211, 297, 432, 492, 540, 574, 611
TspRI CASTG 1 cut(s) 99
XapI RAATTY 2 cut(s) 47, 172
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.