Rorug02G0451900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017101
Physical Location & Seq
Forward (+)
57944056 .. 58002034
57979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0451900.1

Sequence Viewer

Length: 900 bp
ATGACAAACACCAGCTTTCAGAACTTTATCTTTGGTTTCTGTACAAGCCTTCTTATCATCACAACCCTAAGCCATAGCGGGCGTGGGTTGTCATCGAAGGAACATGCACCCGTTTTCATCTTCGGGGATTCAATATATGATGCTGGAAACAATAACTATATAAACACTAGTTATCGGGCAAATTTTCGGCCATATGGTGAAACCTTTTTTAAGAACCCAACAGGAAGATTTTCAGACGGTCGTCTAATTTCAGATTTTATAGCTGAGTACGCAAAACTACCTATTATTCCACCGTATCTACAACCCGGCAATCAGCAATTTACATATGGTGCAAATTTTGCATCTGCAGGAGCTGGTGCTCTGGTTGAAACTTTCCACGGTTTGGTGATAGACCTTAATTCTCAACTTTCAAATTTTGAGCGAGTTCATGAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCCAACACTTTGATATCAAGAGCTGTTTACTTATTTAGTGTCGGAGGCAACGATTACTCATACATATTCGGGACAAACTCCAGCATCCAGCATCCTCACAGGGAATTTGTAGGAACTGTTCTAGGCAACATAACTGCAGCGATCAAAGAAGTATACAACAAAGGAGGAAGAAAATTTGGGTTTCTTAACCTTGATCCTCTTGGTTGTATACCATACTCAAGAGCACTTGAGAAGAAACAAAAAGATGGATGCTTTGAAGAGATTACACCGTATGTAGAACTCCACAATGAAGAACTTCCCAAACTCCTTCAAAAGCTGGAGACTGAACTCAAGGGATTTAAATACTCGCTTTCCAACTATAATGAGTTTCTGAGTGAAAGGATAAATAACCCTTCTAAATATGGGGAAGGTGGCATGTTGTGGAAGTGGTCCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.6

Weight (kDa)

6.4

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 38 - 285 1.9e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04495 AT2G04515
fragaria_vesca FvH4_6g40700
prunus_persica Prupe.3G198500_v2.0.a1
pyrus_communis pycom09g05040 pycom17g10730
rosa_laevigata RLG00000020890
rosa_roxburghii Rroxscaffold_2G00093210
rosa_rugosa Rorug02G0451900
rosa_samantha Rh2BG529800 Rh2CG503500 Rh2DG538900
rosa_wichuraiana Rw2G042700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 2 cut(s) 615, 670
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 6 cut(s) 181, 334, 412, 445, 566, 635
AfaI GTAC 2 cut(s) 43, 269
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 5 cut(s) 132, 368, 411, 719, 773
AhlI ACTAGT 1 cut(s) 167
AluBI AGCT 5 cut(s) 15, 263, 353, 485, 778
AluI AGCT 5 cut(s) 15, 263, 353, 485, 778
Alw21I GWGCWC 2 cut(s) 361, 688
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 6 cut(s) 181, 334, 412, 445, 566, 635
Asp700I GAANNNNTTC 2 cut(s) 229, 756
AspS9I GGNCC 1 cut(s) 891
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 209, 397
AvaII GGWCC 1 cut(s) 891
Bbv12I GWGCWC 2 cut(s) 361, 688
BbvI GCAGC 1 cut(s) 611
BccI CCATC 1 cut(s) 701
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 776
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 2 cut(s) 168, 584
BfmI CTRYAG 2 cut(s) 345, 597
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 891
BmgT120I GGNCC 1 cut(s) 891
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 5 cut(s) 130, 350, 555, 562, 701
BoxI GACNNNNGTC 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 526, 800
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 664, 710, 776
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 4 cut(s) 460, 546, 553, 716
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 255, 824
BseXI GCAGC 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 361, 688
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 361, 688
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 603, 655
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 2 cut(s) 256, 825
BspHI TCATGA 1 cut(s) 427
BspMAI CTGCAG 2 cut(s) 349, 601
BspPI GGATC 1 cut(s) 650
BsrGI TGTACA 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 2 cut(s) 603, 655
BssNAI GTATAC 2 cut(s) 616, 671
Bst1107I GTATAC 2 cut(s) 616, 671
Bst4CI ACNGT 5 cut(s) 239, 294, 380, 580, 732
Bst6I CTCTTC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 68, 264, 833
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 4 cut(s) 460, 546, 553, 716
BstKTI GATC 2 cut(s) 606, 658
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 2 cut(s) 603, 655
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 269, 338
BstNSI RCATGY 2 cut(s) 107, 880
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 345, 597
BstV1I GCAGC 1 cut(s) 611
BstZ17I GTATAC 2 cut(s) 616, 671
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 4 cut(s) 460, 546, 553, 716
Cac8I GCNNGC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 891
Csp6I GTAC 2 cut(s) 42, 268
CviAII CATG 3 cut(s) 104, 428, 877
CviJI RGCY 9 cut(s) 15, 48, 72, 190, 263, 353, 464, 485, 778
CviKI_1 RGCY 9 cut(s) 15, 48, 72, 190, 263, 353, 464, 485, 778
CviQI GTAC 2 cut(s) 42, 268
DdeI CTNAG 3 cut(s) 68, 264, 833
DpnI GATC 2 cut(s) 605, 657
DpnII GATC 2 cut(s) 603, 655
DraI TTTAAA 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 891
EcoRV GATATC 1 cut(s) 477
FaeI CATG 3 cut(s) 107, 431, 880
FaqI GGGAC 1 cut(s) 547
FatI CATG 3 cut(s) 103, 427, 876
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 2 cut(s) 193, 325
FblI GTMKAC 2 cut(s) 615, 670
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 4 cut(s) 467, 533, 540, 723
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 2 cut(s) 168, 584
GluI GCNGC 1 cut(s) 600
GsuI CTGGAG 2 cut(s) 526, 800
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 306
Hin1II CATG 3 cut(s) 107, 431, 880
HinfI GANTC 2 cut(s) 128, 431
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 209, 397
Hpy166II GTNNAC 3 cut(s) 490, 616, 671
Hpy188I TCNGA 5 cut(s) 21, 235, 253, 506, 834
Hpy188III TCNNGA 4 cut(s) 428, 480, 532, 681
Hpy8I GTNNAC 3 cut(s) 490, 616, 671
HpyAV CCTTC 5 cut(s) 59, 91, 779, 863, 864
HpyCH4III ACNGT 5 cut(s) 239, 294, 380, 580, 732
HpyCH4V TGCA 5 cut(s) 107, 332, 341, 347, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 338
HpyF3I CTNAG 3 cut(s) 68, 264, 833
Hsp92II CATG 3 cut(s) 107, 431, 880
Kzo9I GATC 2 cut(s) 603, 655
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 5 cut(s) 130, 350, 555, 562, 701
MaeI CTAG 2 cut(s) 168, 584
MalI GATC 2 cut(s) 605, 657
MboI GATC 2 cut(s) 603, 655
MboII GAAGA 8 cut(s) 112, 237, 454, 470, 642, 706, 731, 764
MhlI GDGCHC 2 cut(s) 361, 688
MluCI AATT 9 cut(s) 181, 246, 317, 334, 397, 412, 445, 566, 635
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 484, 840
MnlI CCTC 5 cut(s) 432, 500, 567, 620, 669
MroXI GAANNNNTTC 2 cut(s) 229, 756
MseI TTAA 4 cut(s) 210, 396, 648, 801
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 269, 338
NciI CCSGG 1 cut(s) 306
NdeI CATATG 2 cut(s) 193, 325
NdeII GATC 2 cut(s) 603, 655
NlaIII CATG 3 cut(s) 107, 431, 880
NspI RCATGY 2 cut(s) 107, 880
PagI TCATGA 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PdmI GAANNNNTTC 2 cut(s) 229, 756
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PshAI GACNNNNGTC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 891
PsrI GAACNNNNNNTAC 2 cut(s) 564, 596
PstI CTGCAG 2 cut(s) 349, 601
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 43, 269
RsaNI GTAC 2 cut(s) 42, 268
SaqAI TTAA 4 cut(s) 210, 396, 648, 801
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 2 cut(s) 603, 655
Sau96I GGNCC 1 cut(s) 891
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 361, 688
SfaNI GCATC 5 cut(s) 130, 350, 555, 562, 701
SfcI CTRYAG 2 cut(s) 345, 597
SinI GGWCC 1 cut(s) 891
SmiI ATTTAAAT 1 cut(s) 802
SmlI CTYRAG 3 cut(s) 679, 689, 791
SmoI CTYRAG 3 cut(s) 679, 689, 791
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 9 cut(s) 181, 246, 317, 334, 397, 412, 445, 566, 635
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 168, 584
StyD4I CCNGG 1 cut(s) 304
SwaI ATTTAAAT 1 cut(s) 802
TaaI ACNGT 5 cut(s) 239, 294, 380, 580, 732
TaqI TCGA 1 cut(s) 95
TasI AATT 9 cut(s) 181, 246, 317, 334, 397, 412, 445, 566, 635
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 4 cut(s) 210, 396, 648, 801
Tru9I TTAA 4 cut(s) 210, 396, 648, 801
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 4 cut(s) 106, 416, 471, 765
TspGWI ACGGA 1 cut(s) 883
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 891
XapI RAATTY 6 cut(s) 181, 334, 412, 445, 566, 635
XceI RCATGY 2 cut(s) 107, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 615, 670
XmnI GAANNNNTTC 2 cut(s) 229, 756
XspI CTAG 2 cut(s) 168, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.